View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_high_11 (Length: 317)
Name: NF16583_high_11
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 6775460 - 6775156
Alignment:
| Q |
1 |
gtgttatgaaataaacttgtaggttaagctnnnnnnnntgaataaactaagataacatcaaga---ccaaaaaccatcaagtcaaccaaagca----tat |
93 |
Q |
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| T |
6775460 |
gtgttatgaaataaacttgtaggctaagctaaaaaaaatgaataaactaagata-catgaagaagaccaaaaaccatcaagtcaaccaaattatatttat |
6775362 |
T |
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| Q |
94 |
tttgtatataacaataagaaagatgagttcataagatcatatgcattttctttctttttacaaaacatttgattctactacattaataacaacaacaaaa |
193 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6775361 |
tttctatataacaatgagaaagatgagttcataagatcatatgcattttctttctttttacaaaacatttgattctactacattaataacaacaacaaaa |
6775262 |
T |
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| Q |
194 |
gagttacatatatagttttgatattactggtagttatggcggatttattgagtggaggtgcagttggagctggaatgggagaattgctgaaatacgctct |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6775261 |
gagttacatatatagttttgatattactggtagttatggcggatttattgagtggaggtgcagttggagctggaatgggagaattgctgaaatacgctct |
6775162 |
T |
|
| Q |
294 |
tcatac |
299 |
Q |
| |
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|||||| |
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| T |
6775161 |
tcatac |
6775156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 17491590 - 17491729
Alignment:
| Q |
48 |
taagataacatcaaga---ccaaaaaccatcaagtcaaccaaagcatattttgtatataacaataagaaagatgagttcataagatcatatgcattttct |
144 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17491590 |
taagataacatcaagaagaccaaaaaccatcaagtcaaccaaagcatattttctatataacaataaga----tgagttcataagatcatatgcattttct |
17491685 |
T |
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| Q |
145 |
ttctttttacaaaacatttgattctactacattaataacaacaa |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17491686 |
ttctttttacaaaacatttgattctactacattaataacaacaa |
17491729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 6762809 - 6762737
Alignment:
| Q |
224 |
tagttatggcggatttattgagtggaggtgcagttggagctggaatgggagaattgctgaaatacgctcttca |
296 |
Q |
| |
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|||||||| | ||| |||||||||||||||| ||||||||||||||||||||| || ||||||||||| |||| |
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| T |
6762809 |
tagttatgactgatctattgagtggaggtgccgttggagctggaatgggagaactggtgaaatacgctattca |
6762737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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