View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_high_12 (Length: 314)
Name: NF16583_high_12
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 40834721 - 40834423
Alignment:
| Q |
1 |
tgttttaatccactttttctaccaattagtaaggatttttctagaagaaaactcctagcacaactggcatagaaggaaggctattgcaatcaacaattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40834721 |
tgttttaatccactttttctaccaattagtaaggatttttctagaagaaaactcctagcacaactggcatagaaggaaggctattgcaatcaacaattat |
40834622 |
T |
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| Q |
101 |
gacacagaaatggaaggctaactagaaagcttgcattttctaaaacatgcaaaacaattactccaaatttctaactagagcaaatggaagactaattgat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40834621 |
gacacagaaatggaaggctaactagagagcttgcattttctaaaacatggaaaacaattactccaaatttctaactagagcaaatggaagactaattgat |
40834522 |
T |
|
| Q |
201 |
atcttccaaatatctagaaatattggatcaatgttacaaaatgcatattagaaagtttctacaatgcattctctaatgcaaacttgttgatgaaccaat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40834521 |
atcttccaaatatctagaaatattggatcaatgttacaaaatgcatattagaaagtttctagaatgcattctctaatgcaaacttgttgatgaaccaat |
40834423 |
T |
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