View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_high_7 (Length: 423)
Name: NF16583_high_7
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 40870305 - 40870703
Alignment:
| Q |
16 |
cactattagctttgatcaagaatttagaaatctatggggagctcagcatcagaaactagaccatggatcattatcaatctggcttgactctaccacaggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870305 |
cactattagctttgatcaagaatttagaaatctatggggagctcagcatcagaaactagaccatggatcattatcaatctggcttgactctaccacaggt |
40870404 |
T |
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| Q |
116 |
atatgaaatcaaatgtctcaaatcatctaccaagttcacctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaatttcaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870405 |
atatgaaatcaaatgtctcaaatcatctaccaagttcacctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaatttcaag |
40870504 |
T |
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| Q |
216 |
catttcataatttgtcgcatgtgtacataaattttgttacaatattaatttctttcatctttgcactatatattactcttctcaattttagatgagccaa |
315 |
Q |
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| T |
40870505 |
catttcataatttgtcgcatgtgtacataaattttgttacaatattaatttctttcatctttgcactatgtattactcttctcaattttagatgagccaa |
40870604 |
T |
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| Q |
316 |
atatgattctaaatttgttaattgcgttctaaactctcgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagtctctgc |
414 |
Q |
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| T |
40870605 |
atatgattctaaatttgttaattgcgttctaaactcttgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagtctctgc |
40870703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 43100162 - 43100111
Alignment:
| Q |
85 |
attatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaa |
136 |
Q |
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|||| |||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
43100162 |
attaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaa |
43100111 |
T |
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