View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_high_8 (Length: 382)
Name: NF16583_high_8
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 333082 - 332713
Alignment:
| Q |
1 |
cggcggccggaccgttttccttgaagaagacaagacatggattgagcaaatccaatcaaagttcccaacgttggaatcatatcatgttgtgtatgataca |
100 |
Q |
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| T |
333082 |
cggcggccggaccgttttccttgaagaagacaagacatggattgagcaaatccaatcaaagttcccaacgttggaatcatatcatgttgtgtatgataca |
332983 |
T |
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| Q |
101 |
aaagtacatcaaagtgatgaactaatgaaaattggaatggaacaagagaattgcaaaaaggtttctgacccaagattttcaaaatgtggattagcactta |
200 |
Q |
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| T |
332982 |
aaagtacatcaaagtgatgaactaatgaaaattggaatggaacaagaggattgcaaaaaagtttctgacccaagattttcaaaatgtggattagcactta |
332883 |
T |
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| Q |
201 |
aaggatttccaagtgaaatttatgatgtggaatgggatgtgatcatggtggatgcaccaacggggtacttcgatggcgcgccggggaggatgagtgctat |
300 |
Q |
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| T |
332882 |
aaggatttccaagtgaaatttatgatgtggaatgggatgtgatcatggtggatgcaccaacggggtacttcgatggcgcgccggggaggatgagtgctat |
332783 |
T |
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| Q |
301 |
ttatacagctggtttgattgctaggaatagagaaaatggtgatactgatgtgtttgttcatgatgttgat |
370 |
Q |
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| T |
332782 |
ttatacagctggtttgattgctaggaatagagaaaatggtgatactgatgtgtttgttcatgatgttgat |
332713 |
T |
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