View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_11 (Length: 372)
Name: NF16583_low_11
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 4847599 - 4847264
Alignment:
| Q |
18 |
atgaaaactcctatagctaagattcaagttacaaataacaaacaaatcaatcaatctatgctagacatatcacatatacatactttctccgctagtttga |
117 |
Q |
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| T |
4847599 |
atgaaaactcctatagctaagattcagtttacaaataacaaacaaatcaatcaatctatgctagacatatcacatatacatactttctccgctagtttga |
4847500 |
T |
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| Q |
118 |
agaatacttctaacttcaaaggtttagtcttgatgtctgctagttgattaatgtatttaaagaacctttaaataattaaacccaccaaatatcatagtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4847499 |
agaatacttctaacttcaaaggtttagtcttgatgtctgctagttgattaatgtatttaaagaacctttaaataattaaacccaccaaatatcatagtaa |
4847400 |
T |
|
| Q |
218 |
aaatggagatgatnnnnnnntaagaagattttaactcgaaaatcagacaaacatttgactaattgcattcggcattgataattaattctttaaagtatat |
317 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4847399 |
aaatggagatgataaaaaaataagaagattttaactccaaaatcagacaaacatttgactaattgcattcggcattgataattaattcttaaaagtatat |
4847300 |
T |
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| Q |
318 |
cacttttaaaaaagcgtaccgcactcacctgagagc |
353 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4847299 |
cacttttaaaaaagcgtaccgcactcacctgagagc |
4847264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 4849904 - 4849821
Alignment:
| Q |
270 |
atttgactaattgcattcggcattgataattaattctttaaagtatatcacttttaaaaaagcgtaccgcactcacctgagagc |
353 |
Q |
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| T |
4849904 |
attttactaattgcatttggcattgataaacaattcttaaaagtatatcacttttaaaaaatcgtaccgcactcacctgagagc |
4849821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 5187736 - 5187795
Alignment:
| Q |
112 |
gtttgaagaatacttctaacttcaaaggtttagtcttgatgtctgctagttgattaatgt |
171 |
Q |
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| T |
5187736 |
gtttgaaaaatacttctagcttcaaaggtttagtcttgatgtctgctggttgattaatgt |
5187795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 5188530 - 5188571
Alignment:
| Q |
301 |
aattctttaaagtatatcacttttaaaaaagcgtaccgcact |
342 |
Q |
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| T |
5188530 |
aattcttaaaagtatatcacttttaaaaaagcgtaccgcact |
5188571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 4850595 - 4850562
Alignment:
| Q |
180 |
aacctttaaataattaaacccaccaaatatcata |
213 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
4850595 |
aacctttaaataattagacccaccaaatatcata |
4850562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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