View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16583_low_12 (Length: 353)
Name: NF16583_low_12
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 26355773 - 26356107
Alignment:
| Q |
1 |
gagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttcgtgtcggcacct |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||| || ||| ||| |
|
|
| T |
26355773 |
gagtcttcttcgtggatctggggatcaaacgacttcaatttttatgatgttagaccgatcaatagaggaactcaagctcccggtgttcacgttggcgcct |
26355872 |
T |
|
| Q |
101 |
ttgttgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatctactacaaattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
26355873 |
ttgttgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattcaatttccaaaatcatgccaaatctagtacaaattga |
26355972 |
T |
|
| Q |
201 |
tgcaatactcaaagtttactctccattgatgtacttacatcctgatgaagaatacttaccttcctcagttaattggtttttctccaatggagcattacta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26355973 |
tgcaatactcaaagtttactctccattgatgtacttacatcctgatgaagaatacttaccttcctcggttaattggtttttctccaatggagcattacta |
26356072 |
T |
|
| Q |
301 |
tacaagaaaggtgaagaatcaaatcctgttccaat |
335 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
26356073 |
tacaaaaaaggtgaagagtcaaatcctgttccaat |
26356107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 26348655 - 26348324
Alignment:
| Q |
1 |
gagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttcgtgtcggcacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| ||||||||| || ||||||| ||||| |||| |
|
|
| T |
26348655 |
gagtcttcttcgtggatttggggatcaaacaacttcaatttctacaatgttagaccaatcaatagaggaactcaagctcctggtgttcgagtcggtacct |
26348556 |
T |
|
| Q |
101 |
ttgttgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatctactacaaattga |
200 |
Q |
| |
|
| |||| ||||||||||||| || || ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
26348555 |
tctttgctcaaaatggtgggaatactaaccctccatcaatttcatgtttgaagaatctcaattctatttcacaaatcatgcctaataaaaaacaaattga |
26348456 |
T |
|
| Q |
201 |
tgcaatactcaaagtttactctccattgatgtacttacatcctgatgaagaatacttaccttcctcagttaattggtttttctccaatggagcattacta |
300 |
Q |
| |
|
||||| ||| |||||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26348455 |
ggcaatgctccaagtttactctccatttctatacttacattctgatgaagaatacttaccttcctcggttaattggtttttctccaatggagcattacta |
26348356 |
T |
|
| Q |
301 |
tacaagaaaggtgaagaatcaaatcctgttcc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26348355 |
tacaagaaaggtgaagaatcaaatcctgttcc |
26348324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 26333422 - 26333088
Alignment:
| Q |
1 |
gagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttcgtgtcggcacct |
100 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| ||||| || || ||||||||||| |||||||| | | ||||| | ||||||| || ||||||| |
|
|
| T |
26333422 |
gagtcttctacatggatttggggatcaaacgacttaaatttctacgacgttagaccaattaatagaggaagtaaagctcccggtgttcgcgttggcacct |
26333323 |
T |
|
| Q |
101 |
ttgttgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatctactacaaattga |
200 |
Q |
| |
|
| ||||| ||||||||||||| || || ||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
26333322 |
tcgttgctcaaaatggtgggaatactaaccctccatcaatttcgtgtttgaagaatctcaattctatttcacaaatcatgcctaatcaaacacaaattga |
26333223 |
T |
|
| Q |
201 |
tgcaatactcaaagtttactctccattgatgtacttacatcctgatgaagaatacttaccttcctcagttaattggtttttctccaatggagcattacta |
300 |
Q |
| |
|
|| ||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
26333222 |
gacattactccactcttactctccattcctatacttacatcctgatgaagaatacttaccttcctctgtcaattggtttttctccaatggagcgttacta |
26333123 |
T |
|
| Q |
301 |
tacaagaaaggtgaagaatcaaatcctgttccaat |
335 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26333122 |
tacaagaaaggtgaagagtcaaatcctgttccaat |
26333088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 26338729 - 26338409
Alignment:
| Q |
15 |
gatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttcgtgtcggcacctttgttgcacaaaat |
114 |
Q |
| |
|
||||||||||||||||| ||| ||||| || |||||||||||||| |||||||| | | ||||| ||||||| || ||||| || ||||| |||||| |
|
|
| T |
26338729 |
gatttggggatcaaacggcttaaatttctacgatgttagaccaattaatagaggaattaaagctctcggtgttcgagttggcacattcgttgctcaaaat |
26338630 |
T |
|
| Q |
115 |
ggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatctactacaaattgatgcaatactcaaag |
214 |
Q |
| |
|
||||||| || || ||| ||||| |||||||||||||| ||| | |||||||| || |||||||||||| | | ||||||||||||| ||||| ||| |
|
|
| T |
26338629 |
ggtgggaatattaacccgccatcaatttcatgtttgaagaatattgattctattacacaaatcatgcctagtaaaaaacaaattgatgcactactccaag |
26338530 |
T |
|
| Q |
215 |
tttactctccattgatgtacttacatcctgatgaagaatacttaccttcctcagttaattggtttttctccaatggagcattactatacaagaaaggtga |
314 |
Q |
| |
|
|| | ||||||| | ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26338529 |
ttaatgctccattcttatacttacattccgatgaagaatacttaccttcctcggttaattggtttttctccaatggagcattactatacaagaaaggtcg |
26338430 |
T |
|
| Q |
315 |
agaatcaaatcctgttccaat |
335 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26338429 |
agaatcaaatcctgttccaat |
26338409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 28315893 - 28315839
Alignment:
| Q |
34 |
ttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttc |
88 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
28315893 |
ttcaatgttcattatgttagaccaatcaatagaggtattgaagctcctagtgttc |
28315839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 5 - 327
Target Start/End: Original strand, 54948834 - 54949156
Alignment:
| Q |
5 |
cttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttcgtgtcggcacctttgt |
104 |
Q |
| |
|
||||||||| |||||||| ||| | ||||||||||| ||||| ||||||||||| | |||||| ||||||||| | ||| ||| ||||| ||||| |
|
|
| T |
54948834 |
cttcttcgttgatttgggaatccgaagacttcaatttctatgacgttagaccaataagtagaggaactcaagctcgaggcattcatgtaggcacttttgt |
54948933 |
T |
|
| Q |
105 |
tgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatctactacaaattgatgca |
204 |
Q |
| |
|
||||||||||||| | || || ||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||| ||||||| | ||| |
|
|
| T |
54948934 |
tgcacaaaatggtagacttactaaccctccatctatttcatgtttgaaaaaccttaattccatttcaaagatcatgcctaatctacaacaaattaaagca |
54949033 |
T |
|
| Q |
205 |
atactcaaagtttactctccattgatgtacttacatcctgatgaagaatacttaccttcctcagttaattggtttttctccaatggagcattactataca |
304 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54949034 |
atactcaaagtttactctccatttgtatacctacatcctgatgaaaaatacttaccttcatcagtcaattggtttttctccaatggagcattactataca |
54949133 |
T |
|
| Q |
305 |
agaaaggtgaagaatcaaatcct |
327 |
Q |
| |
|
|||||||| | || ||||||||| |
|
|
| T |
54949134 |
agaaaggtcatgagtcaaatcct |
54949156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University