View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_13 (Length: 350)
Name: NF16583_low_13
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 37509392 - 37509070
Alignment:
| Q |
10 |
gtgagatgaaggtgataaagaaaataagtgcatgatagatttgaatttgagggggtgttgaacnnnnnnnnnctttctctgctttgattaaatgtgtcta |
109 |
Q |
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| T |
37509392 |
gtgaaatgaaggtgataaagaaaataagtgcatgatagatttgaatttgagggggtgttgaactttttttttctttctctgctttgattaaatgtgttta |
37509293 |
T |
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| Q |
110 |
ctaggagtgttttaaattgtgcttcgcggtccttgatattgctgataattgcaattaaatgtagttgatgtagccttgattactgtttcattgttgtctg |
209 |
Q |
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| T |
37509292 |
ctaggagtgttttaaattgtgcttccaaaagcttaatattgctgataattgcaattaaatgtagttgatgtagccttgattactgttgcattgttgtctg |
37509193 |
T |
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| Q |
210 |
agacataaaaat-tttatggcatggccgaaattgtgtttgcagactttcttaaaatgctgttcattacatagagaatacaataagcgtaagttgtggttg |
308 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||||||| |
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| T |
37509192 |
agacataaaaaaatttatggcatggccgaaattgtgtttgcagactttcttaaaatgctgttcattacatagaaaatacagtaaacataagttgtggttg |
37509093 |
T |
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| Q |
309 |
atcatcttgctttaggacattag |
331 |
Q |
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||||||||||||||||||||||| |
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| T |
37509092 |
atcatcttgctttaggacattag |
37509070 |
T |
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