View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_18 (Length: 289)
Name: NF16583_low_18
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 9018928 - 9019198
Alignment:
| Q |
10 |
gcacagatattaattaccgagaactagtgaagaaggaaaatat---gatgtatatatcttagttagaaa------ttataaagaaagaagaagaattaag |
100 |
Q |
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||||||||||||||||| |||||| || ||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||| || |
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| T |
9018928 |
gcacagatattaattacagagaacaagggaagaaggaaaatataaagatacatatatcttagttagaaggagagcttaaaaagaaagaagaagaattgag |
9019027 |
T |
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| Q |
101 |
tgctatgaaaaagaatcacaagaataacaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
200 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9019028 |
tgctatgaaaaagaatcacaagattaaaaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
9019127 |
T |
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| Q |
201 |
ttcttctacttaggcaactgtttattagatgttaaaataaaaaatgcacaagacacggtaaatgatagcat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9019128 |
ttcttctacttaggcaactgtttattagatgttaaaataaaaaatgcacaagacacggtaaatgatagcat |
9019198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 9028330 - 9028600
Alignment:
| Q |
10 |
gcacagatattaattaccgagaactagtgaagaaggaaaatat---gatgtatatatcttagttagaaa------ttataaagaaagaagaagaattaag |
100 |
Q |
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| T |
9028330 |
gcacagatattaattacagagaacaagggaagaaggaaaatataaagatacatatatcttagttagaaggagagcttaaaaagaaagaagaagaattgag |
9028429 |
T |
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| Q |
101 |
tgctatgaaaaagaatcacaagaataacaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
200 |
Q |
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| T |
9028430 |
tgctatgaaaaagaatcacaagattaaaaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
9028529 |
T |
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| Q |
201 |
ttcttctacttaggcaactgtttattagatgttaaaataaaaaatgcacaagacacggtaaatgatagcat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9028530 |
ttcttctacttaggcaactgtttattagatgttaaaataaaaaatgcacaagacacggtaaatgatagcat |
9028600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 8993648 - 8993869
Alignment:
| Q |
10 |
gcacagatattaattaccgagaactagtgaagaaggaaaatatgatgt---atatatcttagttagaaa------ttataaagaaagaagaagaattaag |
100 |
Q |
| |
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||||||||||||||||| ||||| || ||| ||||||||||||| | ||||||||||||||||| | | |||||||||||||||||| || |
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| T |
8993648 |
gcacagatattaattacaaagaacaagcgaataaggaaaatatgaagatacatatatcttagttagaaggagagctgaaaaagaaagaagaagaattgag |
8993747 |
T |
|
| Q |
101 |
tgctatgaaaaagaatcacaagaataacaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcg |
200 |
Q |
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| ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
8993748 |
ttctatgaaaaagaatcacaatattaacaaaggattagttgcaactatgcatatgaatttgacctcaagactcaaatggaagtgagggtgctccacctcg |
8993847 |
T |
|
| Q |
201 |
ttcttctacttaggcaactgtt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
8993848 |
ttcttctacttaggcaactgtt |
8993869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 9014401 - 9014616
Alignment:
| Q |
11 |
cacagatattaattaccgagaactagtgaagaaggaaaatatga---tgtatatatcttagttagaaa------ttataaagaaagaagaagaattaagt |
101 |
Q |
| |
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|||||||||||||||| |||| |||||| | ||||||||||| || ||||||||||||||||| ||| |||||||||||||||||| ||| |
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| T |
9014401 |
cacagatattaattacaaagaataagtgaacagggaaaatatgaagatgcatatatcttagttagaaggagagcttaaaaagaaagaagaagaattgagt |
9014500 |
T |
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| Q |
102 |
gctatgaaaaagaatcacaagaataacaaaggattagttgcaactatacatatgaatttgacctcaagactcaagtggcagtgagggtgctgcacctcgt |
201 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
9014501 |
gctatggaaaagaatcataagaataacaaaggattagttgcaactatagatatgaatttgac-------ctcaagtggcagtgagggtgctgcacctatt |
9014593 |
T |
|
| Q |
202 |
tcttctacttaggcaactgttta |
224 |
Q |
| |
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||||||||||| ||||||||||| |
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| T |
9014594 |
tcttctacttaagcaactgttta |
9014616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 9017850 - 9017971
Alignment:
| Q |
11 |
cacagatattaattaccgagaactagtgaagaaggaaaatatga---tgtatatatcttagttagaaa------ttataaagaaagaagaagaattaagt |
101 |
Q |
| |
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|||||| ||||||||| |||||| ||||||||||||||||||| || |||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
9017850 |
cacagagattaattacagagaacatgtgaagaaggaaaatatgaaaatgcatatgtcttagttagaaggagagcttaagaagaaagaagaagaattaagt |
9017949 |
T |
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| Q |
102 |
gctatgaaaaagaatcacaaga |
123 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
9017950 |
gctatgaaaaagaatcacaaga |
9017971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 8987614 - 8987739
Alignment:
| Q |
11 |
cacagatattaattaccgagaactagtgaagaaggaaaatatgatgt---atatatcttagttagaaa------ttataaagaaagaagaagaattaagt |
101 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||||||| | ||| ||||||||||||| ||| |||||||||||||||| ||||| |
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| T |
8987614 |
cacagatattaattacaaagaacaagtgaagaagaaaaatatgaagatacataaatcttagttagaaggagagcttagaaagaaagaagaagaaataagt |
8987713 |
T |
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| Q |
102 |
gctatgaaaaagaatcacaagaataa |
127 |
Q |
| |
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|||| ||||||||||||||||||||| |
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| T |
8987714 |
gctacgaaaaagaatcacaagaataa |
8987739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 45555068 - 45555015
Alignment:
| Q |
81 |
aagaaagaagaagaattaagtgctatgaaaaagaatcacaagaataacaaagga |
134 |
Q |
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|||||||||| |||||||| ||||||| ||||||| | ||||||||||| |||| |
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| T |
45555068 |
aagaaagaagcagaattaaatgctatggaaaagaagctcaagaataacagagga |
45555015 |
T |
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