View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_2 (Length: 487)
Name: NF16583_low_2
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Complemental strand, 32074151 - 32073701
Alignment:
| Q |
19 |
atgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatcatgatt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32074151 |
atgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatcatgatt |
32074052 |
T |
|
| Q |
119 |
gccaccccagtcggcatcagagtaagccaacaaattatttttcattgttttacttagcatgagtccatgattcatggtgagcttgatgtaccgcagtact |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32074051 |
gccaccccagtcggcatcggagtaagccaacaaattatttttcattgttttacttagcatgagtccatgattcatggtgagcttgatgtaccgcagtact |
32073952 |
T |
|
| Q |
219 |
cgcttcagatgttgtaggtgaagtgaggtgggtttgtgcataaattgggacaacttgttgatagaatatgacaaatcaggacgagtcaagttgaggtact |
318 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
32073951 |
cgcttcagatgttgcaggtgaagtgaggtgggtttgtgcataaattgggacaacttgttcatagaatatgacaaatcaggacgagtcaaattgaggtact |
32073852 |
T |
|
| Q |
319 |
gaagtcctcctataattctgcgatactcagtggcatcagtggcggttgtaccatcattaagttgtagcatggctgttgaggagagaggagtgggggatgg |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32073851 |
gaagtcctcctataattctgcgatactcagtggcatcagtggcggttgtaccatcattaagttgaagcatggctgttgaggagagaggagtgggggatgg |
32073752 |
T |
|
| Q |
419 |
tttcgccccctccatatcaaacctttgtagaagctcacgaatgtatctgtg |
469 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32073751 |
tttcgccccatccatatcaaacctttgtagaagctcacgaatgtatctgtg |
32073701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 3019714 - 3019608
Alignment:
| Q |
30 |
acggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatcatgattgccaccccagt |
129 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||| |||||| |||| | |||||| |||||||| || || |||||| ||||||| |||| | |
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| T |
3019714 |
acggtgcgttgtttccttgagagccaagaaataggattacctccaaaatatattagatatgcagatgtggaagtacggtcatcaatattgccatcccaat |
3019615 |
T |
|
| Q |
130 |
cggcatc |
136 |
Q |
| |
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| ||||| |
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| T |
3019614 |
cagcatc |
3019608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 28083429 - 28083879
Alignment:
| Q |
19 |
atgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatcatgatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28083429 |
atgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatcatgatt |
28083528 |
T |
|
| Q |
119 |
gccaccccagtcggcatcagagtaagccaacaaattatttttcattgttttacttagcatgagtccatgattcatggtgagcttgatgtaccgcagtact |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28083529 |
gccaccccagtcggcatcggagtaagccaacaatttatttttcattgttttacttagcatgagtccatgattcatggtgagcttgatgtaccgcagtact |
28083628 |
T |
|
| Q |
219 |
cgcttcagatgttgtaggtgaagtgaggtgggtttgtgcataaattgggacaacttgttgatagaatatgacaaatcaggacgagtcaagttgaggtact |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
28083629 |
cgcttcagatgttgtaggtgaagtgaggtgggtttgtgcataaattgggacaacttgtttatagaatatgacaaatcaggacgagtcaaatttaggtact |
28083728 |
T |
|
| Q |
319 |
gaagtcctcctataattctgcgatactcagtggcatcagtggcggttgtaccatcattaagttgtagcatggctgttgaggagagaggagtgggggatgg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
28083729 |
taagtcctcctataattctgcgatactcagtggcattagtggcggttgtaccatcattaagttgaagcatggctgttgaggagagaggagtgggggatgg |
28083828 |
T |
|
| Q |
419 |
tttcgccccctccatatcaaacctttgtagaagctcacgaatgtatctgtg |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28083829 |
tttcgccccctccatatcaaacctttgtagaagctcacgaatgtatctgtg |
28083879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 1109087 - 1109178
Alignment:
| Q |
36 |
cgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatcatgattgccacccca |
127 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| ||||||||||||| |
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| T |
1109087 |
cgttgcttctttgagagccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatcgggattgccacccca |
1109178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 105 - 469
Target Start/End: Original strand, 3700948 - 3701312
Alignment:
| Q |
105 |
cgatcatcatgattgccaccccagtcggcatcagagtaagccaacaaattatttttcattgttttacttagcatgagtccatgattcatggtgagcttga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700948 |
cgatcatcatgattgccaccccagtcggcatcggagtaagccaacaagttatttttcattgttttacttagcatgagtccatgattcatggtgagcttga |
3701047 |
T |
|
| Q |
205 |
tgtaccgcagtactcgcttcagatgttgtaggtgaagtgaggtgggtttgtgcataaattgggacaacttgttgatagaatatgacaaatcaggacgagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3701048 |
tgtaccgcagtactcgcttcagatgttgtaggtgaagtgaggtgggtttgtgcataaattgggacaacttgttgatagaatatgacaaatcaggacgagt |
3701147 |
T |
|
| Q |
305 |
caagttgaggtactgaagtcctcctataattctgcgatactcagtggcatcagtggcggttgtaccatcattaagttgtagcatggctgttgaggagaga |
404 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
3701148 |
caaatttaggtactgaagtcctcctataattctgcgatactcagtggcatcagtggcggttgtaccatcattaagttgaagcatggctgttgaggagaga |
3701247 |
T |
|
| Q |
405 |
ggagtgggggatggtttcgccccctccatatcaaacctttgtagaagctcacgaatgtatctgtg |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3701248 |
ggagtgggggatggtttcgccccctccatatcaaacctttgtagaagttcacgaatgtatctgtg |
3701312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 3690436 - 3690522
Alignment:
| Q |
19 |
atgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3690436 |
atgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgc |
3690522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 9004751 - 9004853
Alignment:
| Q |
36 |
cgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatcatgattgccaccccagtcggcat |
135 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| ||||||||||||| || |||| |
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|
| T |
9004751 |
cgttgcttctttgagagccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatcgggattgccaccccaatcagcat |
9004850 |
T |
|
| Q |
136 |
cag |
138 |
Q |
| |
|
||| |
|
|
| T |
9004851 |
cag |
9004853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 2662647 - 2662541
Alignment:
| Q |
30 |
acggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatcatgattgccaccccagt |
129 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||| |||| | |||| | |||||| |||||||| || || ||||| |||||||||||| | |
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|
| T |
2662647 |
acggtgcgttgtttccttgagagccaagaaataggattacctccaagatatattagatatgcagatgtggaagtacggtcatcgatattgccaccccaat |
2662548 |
T |
|
| Q |
130 |
cggcatc |
136 |
Q |
| |
|
| ||||| |
|
|
| T |
2662547 |
cagcatc |
2662541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 40112935 - 40113012
Alignment:
| Q |
35 |
acgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatc |
112 |
Q |
| |
|
||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |||||||||||| |||||||| ||||| |
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|
| T |
40112935 |
acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
40113012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 6407314 - 6407221
Alignment:
| Q |
19 |
atgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataatatatgctgatgtggaggtgcgatcatc |
112 |
Q |
| |
|
|||||||||| || ||||||||||| ||| ||||| || ||||||||||| |||||||| |||| |||||||||||| |||||||| ||||| |
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|
| T |
6407314 |
atgatcgtgctacagtacgttgtttttgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
6407221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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