View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_20 (Length: 273)
Name: NF16583_low_20
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 2176670 - 2176913
Alignment:
| Q |
17 |
aaatacatttgactttttgaatattttttcttatatttcattctagagaggctatatgttggttcaagttgacagaatggtaactcggtccattgggagt |
116 |
Q |
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| T |
2176670 |
aaatacatttgactttttgaatattttttcttatatttcattctagagaggttatatgttggttcaagttgacagaatggtaactcggtccattgggagt |
2176769 |
T |
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| Q |
117 |
gctataagctcagaagcaacatccttgaatggaagaa---ctccttctttgcatttaaattttgacagtaacttagctgcttcttcctttgtcatcttca |
213 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2176770 |
gctataagttcagaagcaacatccttgaatggaagaactcctccttctttgcatttaaattttgacagtaacttagctgcttcttcctttgtcatcttta |
2176869 |
T |
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| Q |
214 |
ccttcactctagtaacattcatcctttctctttctcctaataat |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176870 |
ccttcactctagtaacattcatcctttctctttctcctaataat |
2176913 |
T |
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