View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_21 (Length: 257)
Name: NF16583_low_21
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 322568 - 322342
Alignment:
| Q |
14 |
agagcaacaaagtaatgaattgagttcnnnnnnnnn-gaattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatggagtagta |
112 |
Q |
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| T |
322568 |
agagcaacaaagtaatgaattgagttcttttttttttgaattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatggaatagta |
322469 |
T |
|
| Q |
113 |
gtagtaatattgattgaaatcagcaataaaagtatgaaagctttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
322468 |
gtagtaatattgattgaaatcagcaataaaagtatgaaagctttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaact |
322369 |
T |
|
| Q |
213 |
acataggtttatattcaacatcttaaa |
239 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
322368 |
acataggtttatattcaacatcttaaa |
322342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 18295240 - 18295447
Alignment:
| Q |
50 |
gaattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatgga---gtagtagtagtaatattgattgaaatcagcaataaaagta |
146 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |
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| T |
18295240 |
gaattaattgaatggcagtaaataggagaatagcagcactc--ggaatttatatggaatagtagtagtagtaatattgatttaaatcagcaacaaaagta |
18295337 |
T |
|
| Q |
147 |
tgaaagct--------------------ttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatat |
226 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18295338 |
tgaaagctgagaattgaaattacaaaatttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggttcatat |
18295437 |
T |
|
| Q |
227 |
tcaacatctt |
236 |
Q |
| |
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|||| |||| |
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| T |
18295438 |
ccaacttctt |
18295447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 47851002 - 47851206
Alignment:
| Q |
51 |
aattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatggagtagtagtagtaatattgattgaaatcagcaataaaagtatgaa |
150 |
Q |
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||||||||||||||||| |||||||||||||||||||| | || || |||||||| |||||| ||||||||||||||||||| | || ||||||||||| |
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| T |
47851002 |
aattaatggaatggcagcaaataggagaatagcagtacccaaggaatatatatggaatagtagcagtaatattgattgaaatctggaacaaaagtatgaa |
47851101 |
T |
|
| Q |
151 |
agc--------------------tttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatattcaa |
230 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| |
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| T |
47851102 |
agctgagaattgaaattacaaaatttcataaatccattcaaatgtcat----accaagtacataggttcataaggaccaaccacataggttcatatccaa |
47851197 |
T |
|
| Q |
231 |
catcttaaa |
239 |
Q |
| |
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||||||| |
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|
| T |
47851198 |
attcttaaa |
47851206 |
T |
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