View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_26 (Length: 235)
Name: NF16583_low_26
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 27130587 - 27130369
Alignment:
| Q |
17 |
tatatacacatttagttggaaattttgtttgttttaacaagtttagcgatgaaacttccacacattaatgatgtctttgctttagcggtagaactcaacc |
116 |
Q |
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| T |
27130587 |
tatatacacatttagttggaaattttgtttgttttaacaagtctagcgatgaaacttccacacattaatgatgtctttgatttagcggtagaactcaacc |
27130488 |
T |
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| Q |
117 |
atacacacgtctggagagaagctaggattcttggcttatgttttttcacgttgaggtgtgtttgtaaattgtaacgtacgaaaagcttgttaaacaccaa |
216 |
Q |
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| T |
27130487 |
atacacacgtcacgagagaagctaggatttttggcttatgttttttcacgttgaggtgtgtttgtaaattgtaacgtacgaaaagcttgttaaacaccaa |
27130388 |
T |
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| Q |
217 |
agcaaacacacattaaatg |
235 |
Q |
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| T |
27130387 |
agcaaacacacattaaatg |
27130369 |
T |
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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 13790522 - 13790431
Alignment:
| Q |
92 |
tttgctttagcggtagaactcaaccatacacacgtctggagagaagctaggattcttggcttatgttttttcacgttgaggtgtgtttgtaa |
183 |
Q |
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| T |
13790522 |
tttgctttagcggtacaactcaaccatacgcacctctggagaaaagttaggattcttggcttcagttttttcacgttgaggtgggtttgtaa |
13790431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 12115511 - 12115609
Alignment:
| Q |
84 |
atgatgtctttgctttagcggtagaactcaaccatacacacgtctggagagaagctaggattcttggcttatgttttttcacgttgaggtgtgtttgta |
182 |
Q |
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| T |
12115511 |
atgatgtggttgctttagcggtagaactcaaccatacgtgcgtttggatagaagctaggattaatggcttctgtttttttacgttgggttgagtttgta |
12115609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 39024706 - 39024610
Alignment:
| Q |
87 |
atgtctttgctttagcggtagaactcaaccatacacacgtctggagagaagctaggattcttggcttatgttttttcacgttgaggtgtgtttgtaa |
183 |
Q |
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| T |
39024706 |
atgtgtttgttttagcagtacaactcaatcatacacacgtatggagagaagctatgattcttggcttatgttttttcacgttggagtgggtttgtaa |
39024610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 39024888 - 39024806
Alignment:
| Q |
87 |
atgtctttgctttagcggtagaactcaaccatacacacgtctggagagaagctaggattcttggcttatgttttttcacgttg |
169 |
Q |
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| T |
39024888 |
atgtgtttgttttagcggtacaactcaatcatacatacgtatggagagaagctatgattcttgacttttgttttttcacgttg |
39024806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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