View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_28 (Length: 230)
Name: NF16583_low_28
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 37083335 - 37083531
Alignment:
| Q |
16 |
gaagaagaacgaatcggcgtggttaattattggctaaaaaaccatccacacaaggataaagcgaatgcagcatttttcaaaggtggaagtgattttgaag |
115 |
Q |
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| T |
37083335 |
gaagaagaacgaatcggcgtggttaattattggctaaaaaaccatccacacaaggataaagcgaatgcagcatttttcaaaggtggaagtgattttgaag |
37083434 |
T |
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| Q |
116 |
aatcgcgtacgaacgtggtagtgaaaaattccaaagaaagatcggcaaagtggcatgttaaagatcaaacaaccagcacagtagagtcagtaagttc |
212 |
Q |
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| T |
37083435 |
aatcgcgtacgaacgtggtagtgaaaaattccaaagaaagatcggcaaagtggcatgttaaagatcaaacaaccagcacagtagagtcagtaagttc |
37083531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 11002665 - 11002466
Alignment:
| Q |
16 |
gaagaagaacgaatcggcgtggttaattattggctaaaaaaccatccacacaaggataaagcgaatgcagcatttttcaaaggtggaagtgattttgaag |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
11002665 |
gaagaagaacgaattggcgtggttaattattggctaaaaaaccatccacacaaggataaagtgaatgcagcatttttcaacggtggaagtgattttgaag |
11002566 |
T |
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| Q |
116 |
aatc---gcgtacgaacgtggtagtgaaaaattccaaagaaagatcggcaaagtggcatgttaaagatcaaacaaccagcacagtagagtcagtaagttc |
212 |
Q |
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|||| ||| ||| ||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||| | |||||||||||||||| |
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| T |
11002565 |
aatcacgtcgtcagaaagtggtagtgaaaaatcccaaagaaagaatggcaaagtggcctgttaacgatcaaacaaccagcagactagagtcagtaagttc |
11002466 |
T |
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