View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_3 (Length: 480)
Name: NF16583_low_3
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 21513635 - 21513949
Alignment:
| Q |
11 |
agcacagacacatacatagacacggacaccaggacatgtctaatttgagaaaatgacataaaatttaatgtaatcatgtgtattggtgtcgtgacggaca |
110 |
Q |
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| T |
21513635 |
agcacagacacatacatagacacagacaccaggacatgtctaatttgagaaaatgacataaaatttaatgtaatcatgtgtattggtgtcgtgacggaca |
21513734 |
T |
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| Q |
111 |
atatacatatacaacacgtagacacgcctaatccaagaagta-------------gactacgtgtcagtaccacaaatcccaattcaacctacatgcata |
197 |
Q |
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| T |
21513735 |
ctatacatatacaacacatagacacgcctaatccaagaagtatctgtgctttttagactacgtg------ccacaaatcccaattcaacctacatgcata |
21513828 |
T |
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| Q |
198 |
cattgcaatacaatccaatccaacccaacaacccaaaaactcttgttcacataaaaaatcactgtttctcttgaattccacaaacccaacaaaaaatttg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
21513829 |
cattgcaatacaatccaatccaacccaacaacccaaaaactcttgttcacat-aaaaatcattgtttctcttgaattccacaaacccaacaaaaaaattg |
21513927 |
T |
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| Q |
298 |
acgccaacaaacatatcagaag |
319 |
Q |
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| T |
21513928 |
acgccaacaaacacatcagaag |
21513949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 420 - 462
Target Start/End: Original strand, 21514030 - 21514072
Alignment:
| Q |
420 |
ggcaatgacatacaggagtataacgaaacttccttctaggtgg |
462 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21514030 |
ggcaataacatacaggagtataacgaaacttccttctaggtgg |
21514072 |
T |
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