View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_4 (Length: 466)
Name: NF16583_low_4
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 273 - 451
Target Start/End: Complemental strand, 8061726 - 8061548
Alignment:
| Q |
273 |
tataagggcagataatgtcaaatataagtatcattgaatgttaagcttcataatagaatcatttttgtgattcaaactaaactaagccattatcttaact |
372 |
Q |
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| T |
8061726 |
tataagggcagataatgtcaaatataagcatcattgaatgatatgcttcataatagaatcatttttgtgattcaaactaaactaagccattatcttaact |
8061627 |
T |
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| Q |
373 |
ttaagctatttcttgctttcttttatgtggatagtacatttaggaaactattgtttgttaagtatcatccaatgatatg |
451 |
Q |
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| T |
8061626 |
ttaagctatttcttgctttcttttatgtggatagtacatttaggaaactattgtttgttaagtatcatccaaagatatg |
8061548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 8067660 - 8067523
Alignment:
| Q |
1 |
gtcatgaacaacggttatgatattgtgttggtctttgtccgatttgatatctctgttaggttctctcgtacaaacaaaaagaattgagagcacacacatg |
100 |
Q |
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| T |
8067660 |
gtcatgaacaacggttatgatattgtgttggtctttgtccgatttgatatctctgttaggttctctcgtacaaacaaaaagaattgagagcacacacatg |
8067561 |
T |
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| Q |
101 |
atcggtcgcttcgatagaaaataagagagagacttgaa |
138 |
Q |
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| T |
8067560 |
atcggtcgcttcgatagaaaataagagagagacttgaa |
8067523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 8061852 - 8061760
Alignment:
| Q |
147 |
agtttatgccaattattttttaaacatgtctgtccaaaactagtgtcttatgaaagtcacataatgtcaaatgaaattcccaacttccattat |
239 |
Q |
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| T |
8061852 |
agtttatgccaattattttttaaacatgtctgtccaaaactagtgtcttatgaaagtcacataatgtcaaatgaaattcccaaattccattat |
8061760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 428
Target Start/End: Original strand, 7930820 - 7930914
Alignment:
| Q |
334 |
tttttgtgattc-aaactaaactaagccattatcttaactttaagctatttcttgctttcttttatgtggatagtacatttaggaaactattgttt |
428 |
Q |
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| T |
7930820 |
tttttgtgattctaaactaaactaagccataatcttaactttaagccatttcttcttttcttttatgtggatatta-aattaggaaactgttgttt |
7930914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 47140115 - 47140061
Alignment:
| Q |
57 |
taggttctctcgtacaaacaaaaagaattgagag---cacacacatgatcggtcg |
108 |
Q |
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| T |
47140115 |
taggttctctcgcacaaacaagaagaattgagagtcacacacacatgatcagtcg |
47140061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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