View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_low_6 (Length: 448)
Name: NF16583_low_6
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 441
Target Start/End: Original strand, 39032475 - 39032915
Alignment:
| Q |
6 |
atggtgcatgttccagaaatctaggaaatgggggctgaaaaaattattgaaaggaaagattttggnnnnnnnn-----------atttagatatgaaaat |
94 |
Q |
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| T |
39032475 |
atggtgcatgttccagaaatctaggaaatgggggctgaaaaaattattgaaaggaaagattttgctttttttttttatttttttatttagatatgaatat |
39032574 |
T |
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| Q |
95 |
ttgcctgaatttgtgtagtcattgcaaaatcgttggtcatggctttgatgaatacatgcggatcgataaagacgaggtgaatatttatgatgttgaggtt |
194 |
Q |
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| T |
39032575 |
ttgcctgaatttttgtagtcattgcaaaatcgttggtcatggctttgatgaatacaagcggatcgataaagaccaaatgaatatttatgatgttgaggtt |
39032674 |
T |
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| Q |
195 |
aagatcaaaagaaaatcaatgaggtaaaaactgttattatggattagcgtatggcttgttcttgaatgaagttaacaatcttgttaattttaaggataat |
294 |
Q |
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| T |
39032675 |
aagatcaaaagaaaaccgatgaggttaaaagtgttattatggattagcgtatggcttgttcttgaatgaagttaacaatcttgttaattttaaggataat |
39032774 |
T |
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| Q |
295 |
gctacttctctcgacatattttctagcaaaaagatgacgaccttgttgctagnnnnnnnnattgcaactacaattaatcaactctttcttttttatccaa |
394 |
Q |
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| T |
39032775 |
gctacttctcgcgacata-tttctagcaaaaagatgacgaccttgttgctag-tttttttattgcaactac----aatcgactctttcttttttatccaa |
39032868 |
T |
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| Q |
395 |
ccacccatgatgtccaccaatttagatctaacggtgacattcttttc |
441 |
Q |
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| T |
39032869 |
ccacccatgatgtccaccaatttagatctaacggtgacattcttttc |
39032915 |
T |
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