View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16584_low_1 (Length: 636)
Name: NF16584_low_1
Description: NF16584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16584_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 624
Target Start/End: Complemental strand, 11113763 - 11113159
Alignment:
| Q |
18 |
caacaagtcaccaactagcagacctcccgactaaaccattttcttcctcgcaccataatttcgtaaaatgctcattactaggtcgactgacaaacctgca |
117 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11113763 |
caacaagtcaccaattggcagacctcccgactaaaccattttcttcctcgaaccataatttcgtaaaatgctcattactaggtcaactgacaaacctgca |
11113664 |
T |
|
| Q |
118 |
caacaatcccacaacataggcactgtcgaatctaatgcaatcagtgacatatatgaagctgccgatgatggttgcatattatgattgtctcacactttca |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11113663 |
caacaatcccacaacataggcactgttgaatctaatgcaatcagtgacatacatgaagctgccgatgatggttgcatattatgattgtgtcacactttca |
11113564 |
T |
|
| Q |
218 |
cagtgttcttaaatagttttctacacttgaacccaagtgaataaatggggnnnnnnnttatatacgtggtctatccttacaagacatcaattctcgtatt |
317 |
Q |
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| |||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11113563 |
ccgtgttcttaaatagtt--ctacacttgaaccccagtgaataaataggggaaaaaattatatacgtggtctatccttacaagacatcaattctcgtaat |
11113466 |
T |
|
| Q |
318 |
agagctacatgcaaacaaacaaaatacatatgctttcaaattggacaagttttctttcattaatacaataaaagaacagtacatacatactcattcaata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11113465 |
agagctacatgcaaacaaacaaaatacatatgctttcaaattggacaagttttctttcattaatacaataaaagaacagtacatacatactcattcaata |
11113366 |
T |
|
| Q |
418 |
tagtggttcttattctcttagctttacaataaataataataagcaatgacccttaacataataagtaaaaatgaatnnnnnnnngatatggaaagacact |
517 |
Q |
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| T |
11113365 |
tagtggttcttattctcttagctttacaataaataataataagcaatgacccttaacataataagtaaaaatgaataaaaaaaagatatggaaagacact |
11113266 |
T |
|
| Q |
518 |
tatgtgttgtgttagttacttagtttgagaggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctg |
617 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11113265 |
tgtgtgttgtgttagttacttagtttgagaggaacaattcgaagtggttgagcctcccgtagagtaatcccaaatttatcatccatgttcatatcttctg |
11113166 |
T |
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| Q |
618 |
gtttcat |
624 |
Q |
| |
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||||||| |
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| T |
11113165 |
gtttcat |
11113159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 452 - 624
Target Start/End: Original strand, 11106159 - 11106321
Alignment:
| Q |
452 |
aataataagcaatgacccttaacataataagtaaaaatgaatnnnnnnnngatatggaaagacacttatgtgttgtgttagttacttagtttgagaggaa |
551 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
11106159 |
aataataagcaatgacccttaacatagcaagtaaaaatgaa---gcaaaagatatggaaaaacactt-------gtgttagttacttagtttgagaggaa |
11106248 |
T |
|
| Q |
552 |
caattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
624 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11106249 |
caattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
11106321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 544 - 624
Target Start/End: Complemental strand, 46927831 - 46927751
Alignment:
| Q |
544 |
gagaggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
624 |
Q |
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|||||||| ||||||||| |||| || ||||| ||||||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
46927831 |
gagaggaagaattcgaaggggtttggctttttgaagagtaagtccaaatttatcatccatatccatatcttctggtttcat |
46927751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 629
Target Start/End: Complemental strand, 46934698 - 46934616
Alignment:
| Q |
547 |
aggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatctcac |
629 |
Q |
| |
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|||||||| |||||| ||||| |||||||| | ||||| || |||||||||| ||||| |||||||||||||||||| |||| |
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| T |
46934698 |
aggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcatgtcac |
46934616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 8718304 - 8718157
Alignment:
| Q |
91 |
attactaggtcgactgacaaacctgcacaacaatcccacaacataggcactgtcgaatctaatgcaatcagtgacatatatgaagctgccgatgatggtt |
190 |
Q |
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|||| |||||| |||||||||||||||||||| |||||| || ||| || ||||| |||| |||||||| ||||||| |||| |||| ||||| || |
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| T |
8718304 |
attattaggtctactgacaaacctgcacaacattcccacgacctagtcaatgtcgggtctagtgcaatcaatgacatacatgaggctgtgaatgatactt |
8718205 |
T |
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| Q |
191 |
gcatattatgattgtctcacactttca-cagtgttcttaaatagtttt |
237 |
Q |
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| ||||| ||||||||||| ||||| | |||||||||| ||||||||| |
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| T |
8718204 |
gtatattctgattgtctcaaacttttaccagtgttcttgaatagtttt |
8718157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 6009835 - 6009681
Alignment:
| Q |
84 |
aatgctcattactaggtcgactgacaaacctgcacaacaatcccacaacataggcactgtcgaatctaatgcaatcagtgacatatatgaagctgccgat |
183 |
Q |
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|||||||||||| ||||| ||| ||||| |||||||| ||||| ||||||| || ||||| | | |||||| ||||||||| |||| ||| | || |
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| T |
6009835 |
aatgctcattaccaggtctactaacaaatatgcacaactttcccataacatagacaatgtcgggtgtggtgcaattagtgacatacatgagactgtcaat |
6009736 |
T |
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| Q |
184 |
gatggttgcatattatgattgtctcacactttca-cagtgttcttaaatagtttt |
237 |
Q |
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|||| ||||||||| | ||||| ||||||||| |||||||||||||||||||| |
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| T |
6009735 |
gatgcttgcatattctatctgtcttacactttcaccagtgttcttaaatagtttt |
6009681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 4540309 - 4540265
Alignment:
| Q |
84 |
aatgctcattactaggtcgactgacaaacctgcacaacaatccca |
128 |
Q |
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| T |
4540309 |
aatgctcattactaggtctatcgacaaacctgcacaacattccca |
4540265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 40836040 - 40836092
Alignment:
| Q |
85 |
atgctcattactaggtcgactgacaaacctgcacaacaatcccacaacatagg |
137 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||||| || |||||||||| |
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| T |
40836040 |
atgctcattagtaggtctactgacaaacctgcacaacaaccctacaacatagg |
40836092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 24944634 - 24944483
Alignment:
| Q |
88 |
ctcattactaggtcgactgacaaacctgcacaacaatcccacaacat-aggcactgtcgaatctaatgcaatcagtgacatatatgaagctgccgatgat |
186 |
Q |
| |
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|||||||||| || ||||||||||||| |||| | |||| | |||| || || |||||| |||| ||||||||||| |||| |||| ||||| || | |
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| T |
24944634 |
ctcattactaagtttactgacaaacctggacaatagtcccgcgacattagacaatgtcgagtctagtgcaatcagtggcatacatgaggctgcaaatatt |
24944535 |
T |
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| Q |
187 |
ggttgcatattatgattgtctcacactttca-cagtgttcttaaatagtttt |
237 |
Q |
| |
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| |||||||| ||||||||||||||| ||| |||||||||| |||| |||| |
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| T |
24944534 |
gcatgcatattttgattgtctcacactgtcaccagtgttcttgaatattttt |
24944483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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