View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16584_low_10 (Length: 232)
Name: NF16584_low_10
Description: NF16584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16584_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 36964853 - 36965018
Alignment:
| Q |
47 |
agatagatagatcgaaagactttcctcaattgtaagaaactccatataggacttttcatttacactttcttcggtagccattgcagggaagacacatctt |
146 |
Q |
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| T |
36964853 |
agatagatagatcgaaagactttcctcaattgtaagaaactccatataggacttttcatttacactttcttcggtagccattgcagggaagacacatctt |
36964952 |
T |
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| Q |
147 |
ggaattggtcccgtcaattgattgtcagaaagatctaatatatgtagagacttaagtaggcataaa |
212 |
Q |
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| T |
36964953 |
ggaattggtcccgtcaattgattgtcagaaagatctaatatatgtagagacttaagtaggcataaa |
36965018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 211
Target Start/End: Original strand, 36976603 - 36976754
Alignment:
| Q |
60 |
gaaagactttcctcaattgtaagaaactccatataggacttttcatttacactttcttcggtagccattgcagggaagacacatcttggaattggtcccg |
159 |
Q |
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| T |
36976603 |
gaaagactttccttaatcgtaagaaactccatatatgatttttcatttatactttcctcagtagccattgcagggaagacacatcttggtatctctcccc |
36976702 |
T |
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| Q |
160 |
tcaattgattgtcagaaagatctaatatatgtagagacttaagtaggcataa |
211 |
Q |
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| T |
36976703 |
ttaattgattctctgaaagatctaatatctttaaagacttgagtaggcataa |
36976754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 47 - 214
Target Start/End: Complemental strand, 5868479 - 5868312
Alignment:
| Q |
47 |
agatagatagatcgaaagactttcctcaattgtaagaaactccatataggacttttcatttacactttcttcggtagccattgcagggaagacacatctt |
146 |
Q |
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| T |
5868479 |
agatagatagatcggaagactttcctcaattgtcataaactccatatatgatttttcatttatactttcttcagtagtcagtgcaaggaagacacatctt |
5868380 |
T |
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| Q |
147 |
ggaattggtcccgtcaattgattgtcagaaagatctaatatatgtagagacttaagtaggcataaagt |
214 |
Q |
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||||||| |||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||| |
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| T |
5868379 |
ggaattgcacccgtcaattgattctcggaaagatctaatatatgcagagacttaagttggcataaagt |
5868312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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