View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16584_low_2 (Length: 456)
Name: NF16584_low_2
Description: NF16584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16584_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 2829620 - 2830053
Alignment:
| Q |
10 |
aaatgaaggatatatagtatatgttctgaaatattacaagagaaaacagcatccagggagcaataaattttcttnnnnnnnnnncaacctatgtcttcat |
109 |
Q |
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| T |
2829620 |
aaatgaaggatatatagtatatgttctgaaatattacaagagaaaacagcatccagggagcaataaattttcttaaaaaaaaaacaacctatgtcttcat |
2829719 |
T |
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| Q |
110 |
atcattgatgctggaatagttacctcaagcatttttattttctctctcagacttgccatttcttttgaatgatgaggactggaagcaannnnnnngttga |
209 |
Q |
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| T |
2829720 |
atcattgatgctagaatagttacctcaagcatttttattttctctctcagacttgccatttcttttgaatgatgaggactggaagcaatttttttgttga |
2829819 |
T |
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| Q |
210 |
ttgggatggttttagatccatcagaaagttggttgcgtccgttactatccctgaatctcttctcaatgctggttaatgcatcacctttcttctttatttc |
309 |
Q |
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| T |
2829820 |
ttgggatggttttagatccatcagaaagttggttgcgtccgttactatccctgaatctcttctcaatgctggttaatgcatcacctttcttctttatttc |
2829919 |
T |
|
| Q |
310 |
actctttagctgggaaatttgctttcttagtttttctttctcagcctcatcctcaaaaagtgactttttcaaatcactgcattgaactctaatagcttcc |
409 |
Q |
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| T |
2829920 |
actctttagctgggaaatttgctttcttagtttttctttctcagcctcatcctcaaaaagtgactttttcaaatcactgcattgaactctaatagcttcc |
2830019 |
T |
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| Q |
410 |
aactcagacttcaatagtctagcctcttcttctt |
443 |
Q |
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| T |
2830020 |
aactcagacttcaatagtctagcctcttcttctt |
2830053 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 40800725 - 40800658
Alignment:
| Q |
129 |
ttacctcaagcatttttattttctctctcagacttgccatttcttttgaatgatgaggactggaagca |
196 |
Q |
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| T |
40800725 |
ttacctcaagcatttttattttctctctcagatctgtcatttctttggagttatgaggaattgaagca |
40800658 |
T |
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