View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16584_low_3 (Length: 318)
Name: NF16584_low_3
Description: NF16584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16584_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 36932316 - 36932601
Alignment:
| Q |
17 |
agaagaatttgttgagcagagcaatttgaagaggagttgtgtgagcaacaattgagaactaaaagaggcacaatgtgaaattgatcacatattgatatac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36932316 |
agaagaatttgttgagcagagcaatttgaagaggagttgtgtgagcaacaattgagaactaaaagaggcacaatgtgaaattgatcacatattgatatac |
36932415 |
T |
|
| Q |
117 |
tccatttataccaatctttgttttacttttgtatcatatcaaatcaaatacaatgtatatgcaaataaatgagcaaaccaatctttattacaccttatca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36932416 |
tccatttataccaatctttgttttactttcgtatcatatcaaatcaaatacaatgtatatgcaaataaatgagcaaaccaatctttatcacaccttatca |
36932515 |
T |
|
| Q |
217 |
aaatgaagaatgcaagatacaaaactttgagtcacgtggcacaaattggtaggaaatatttaccaagccattaacacccacattct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36932516 |
aaatgaagaatgcaagatacaaaactttgagtcacgtggcacaaattggtaggaaatattgaccaagccattaacacccacattct |
36932601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University