View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16584_low_5 (Length: 289)
Name: NF16584_low_5
Description: NF16584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16584_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 42603368 - 42603633
Alignment:
| Q |
10 |
agaacctgtgtgtggctgattatatgttagaaatatggatcccaagaaatgtcaactcttgtgcatgagttcagaatatttattgggctgtcttagtcat |
109 |
Q |
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| T |
42603368 |
agaacctgtatgtggctgattatatgttagaaatatggatcccaagaaatgtcaactcttgtgcatgagttcagaatatttattgggctgtcttagtcat |
42603467 |
T |
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| Q |
110 |
gtttttaattaattttccgtaacctatatctcttattttatgttaattagtacaaacaagacaac-aaagacctaagccaaaaataaaatcatcaactac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42603468 |
gtttttaattaattttccgtaacctatatctcttattttatgttaattagtacaaacaagacaacaaaagacctaagccaaaaataaaatcatcaactac |
42603567 |
T |
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| Q |
209 |
ttaaaggtaagaatgggttcaaatcaatcaggtcgtaggtaaccatgcacttggatgtgtcaaatg |
274 |
Q |
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| T |
42603568 |
ttaaaggtaagaatgggttcaaatcaatcaggtcgtaggtaaccatgcacttggatgtgtcaaatg |
42603633 |
T |
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