View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16584_low_7 (Length: 268)

Name: NF16584_low_7
Description: NF16584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16584_low_7
NF16584_low_7
[»] chr1 (14 HSPs)
chr1 (1-268)||(23627394-23627663)
chr1 (56-268)||(23617815-23618028)
chr1 (56-268)||(23649157-23649370)
chr1 (56-268)||(23734784-23734997)
chr1 (56-131)||(23741976-23742051)
chr1 (203-264)||(23617688-23617749)
chr1 (203-264)||(23649029-23649090)
chr1 (1-56)||(23627924-23627979)
chr1 (4-53)||(23617659-23617708)
chr1 (4-53)||(23649000-23649049)
chr1 (4-53)||(23734630-23734679)
chr1 (4-53)||(23741822-23741871)
chr1 (203-264)||(23734659-23734720)
chr1 (203-264)||(23741851-23741912)
[»] chr3 (4 HSPs)
chr3 (73-248)||(52805725-52805902)
chr3 (73-268)||(53287881-53288076)
chr3 (193-237)||(52545773-52545817)
chr3 (203-268)||(52805574-52805639)
[»] chr6 (11 HSPs)
chr6 (73-268)||(11841737-11841932)
chr6 (219-265)||(34106729-34106775)
chr6 (229-267)||(34135862-34135900)
chr6 (219-261)||(34168325-34168367)
chr6 (229-267)||(34138860-34138898)
chr6 (200-268)||(34119034-34119103)
chr6 (200-268)||(34146193-34146262)
chr6 (200-268)||(34158809-34158878)
chr6 (200-268)||(28711040-28711108)
chr6 (233-265)||(34091888-34091920)
chr6 (222-266)||(34114542-34114586)
[»] chr4 (2 HSPs)
chr4 (75-268)||(48430719-48430914)
chr4 (200-268)||(38648626-38648694)
[»] chr8 (1 HSPs)
chr8 (206-263)||(4382903-4382960)
[»] scaffold1113 (1 HSPs)
scaffold1113 (219-267)||(1838-1886)
[»] scaffold0961 (1 HSPs)
scaffold0961 (219-267)||(1731-1779)
[»] scaffold0620 (1 HSPs)
scaffold0620 (233-265)||(7222-7254)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 23627663 - 23627394
Alignment:
Q  1 caaaattacatttccgtagcttcgcacccagctgatattaaagaattcaaataggcttcaaaaaatgcacgttgcaaagactatgatacataaagagaac 100  Q
    ||||||| |||||| ||||||||| || | |||||||||||||||||||||||||| |  || |||||||||||||||||||||||||||||||||||||    
T  23627663 caaaattccatttctgtagcttcgtacactgctgatattaaagaattcaaataggccttgaataatgcacgttgcaaagactatgatacataaagagaac 23627564  T
Q  101 tagaatgaactcttgtgcgaatcgaactgaaggagtctcttccatacctctagtcaggatagtaagcaacccctctctcccag--caggctgctgtttag 198  Q
    |||||||||||| |||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  |  ||||||||||||    
T  23627563 tagaatgaactcctgtgtgaatggaactgaaggagtctcctccataactctagtcaggatagtaagcaacccctctctcccagcccccgctgctgtttag 23627464  T
Q  199 aaattgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcattgc 268  Q
    ||||||||||  ||||||||||||||||| |||||||| | |||| |||  |||||||||||||||||||    
T  23627463 aaattgatatcgaagatttaaaatatgcagaaagaaacaataattgtgatgcttgaatcaaaagcattgc 23627394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 56 - 268
Target Start/End: Original strand, 23617815 - 23618028
Alignment:
Q  56 cttcaaaaaatgcacgttgcaaagactatgatacataaagagaactagaatgaactcttgtgcgaatcgaactgaaggagtctcttcc---atacctcta 152  Q
    ||||||| |||||||||||||||||| |||||||| | ||||| |||||||||| || |||||||||||||||||||||||||| |||   ||| |||||    
T  23617815 cttcaaacaatgcacgttgcaaagacaatgatacacatagagagctagaatgaattcctgtgcgaatcgaactgaaggagtctcctcctccataactcta 23617914  T
Q  153 gtcaggatagtaagcaacccctctctcccagcaggctgctgtttagaaattgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaactt 252  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||  |||||||| ||||  |||||||    
T  23617915 gtcaggatagtaagcaacccctctctcccagcccgctgctgtttagaaattgatattgaagatttaaaatatgcac--agaaactataattgcgaaactt 23618012  T
Q  253 gaatcaaaagcattgc 268  Q
    ||||||||||||||||    
T  23618013 gaatcaaaagcattgc 23618028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 56 - 268
Target Start/End: Original strand, 23649157 - 23649370
Alignment:
Q  56 cttcaaaaaatgcacgttgcaaagactatgatacataaagagaactagaatgaactcttgtgcgaatcgaactgaaggagtctcttcc---atacctcta 152  Q
    ||||||| |||||||||||||||||| |||||||| | ||||| |||||||||| || |||||||||||||||||||||||||| |||   ||| |||||    
T  23649157 cttcaaacaatgcacgttgcaaagacaatgatacacatagagagctagaatgaattcctgtgcgaatcgaactgaaggagtctcctcctccataactcta 23649256  T
Q  153 gtcaggatagtaagcaacccctctctcccagcaggctgctgtttagaaattgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaactt 252  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||  |||||||| ||||  |||||||    
T  23649257 gtcaggatagtaagcaacccctctctcccagcccgctgctgtttagaaattgatattgaagatttaaaatatgcac--agaaactataattgagaaactt 23649354  T
Q  253 gaatcaaaagcattgc 268  Q
    ||||||||||||||||    
T  23649355 gaatcaaaagcattgc 23649370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 56 - 268
Target Start/End: Original strand, 23734784 - 23734997
Alignment:
Q  56 cttcaaaaaatgcacgttgcaaagactatgatacataaagagaactagaatgaactcttgtgcgaatcgaactgaaggagtctcttcc---atacctcta 152  Q
    ||||||| |||||||||||||||||| |||||||| | ||||| |||||||||| || |||||||||||||||||| ||||||| |||   ||| |||||    
T  23734784 cttcaaacaatgcacgttgcaaagacaatgatacacatagagagctagaatgaattcctgtgcgaatcgaactgaatgagtctcctcctccataactcta 23734883  T
Q  153 gtcaggatagtaagcaacccctctctcccagcaggctgctgtttagaaattgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaactt 252  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||  |||||||| ||||  |||||||    
T  23734884 gtcaggatagtaagcaacccctctctcccagcccgctgctgtttagaaattgatattgcagatttaaaatatgcac--agaaactataattgcgaaactt 23734981  T
Q  253 gaatcaaaagcattgc 268  Q
    ||||||||||||||||    
T  23734982 gaatcaaaagcattgc 23734997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 23741976 - 23742051
Alignment:
Q  56 cttcaaaaaatgcacgttgcaaagactatgatacataaagagaactagaatgaactcttgtgcgaatcgaactgaa 131  Q
    ||||||| |||||||||||||||||| |||||||| | ||||| |||||||||| || ||||||||||||||||||    
T  23741976 cttcaaacaatgcacgttgcaaagacaatgatacacatagagagctagaatgaattcctgtgcgaatcgaactgaa 23742051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 23617688 - 23617749
Alignment:
Q  203 tgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagca 264  Q
    |||||||||||| || ||||||||| | |||||||||||||  |||||||||||||||||||    
T  23617688 tgatattaaagaattcaaatatgcatatagaaactaaaattgagaaacttgaatcaaaagca 23617749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 23649029 - 23649090
Alignment:
Q  203 tgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagca 264  Q
    |||||||||||| || ||||||||| | |||||||||||||  |||||||||||||||||||    
T  23649029 tgatattaaagaattcaaatatgcatatagaaactaaaattgagaaacttgaatcaaaagca 23649090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23627979 - 23627924
Alignment:
Q  1 caaaattacatttccgtagcttcgcacccagctgatattaaagaattcaaataggc 56  Q
    ||||||| |||||| ||||||||| || | ||||||||||||||||||||||||||    
T  23627979 caaaattccatttctgtagcttcgtacactgctgatattaaagaattcaaataggc 23627924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 23617659 - 23617708
Alignment:
Q  4 aattacatttccgtagcttcgcacccagctgatattaaagaattcaaata 53  Q
    |||| ||||||| |||||| |||||| |||||||||||||||||||||||    
T  23617659 aattccatttccatagctttgcaccctgctgatattaaagaattcaaata 23617708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 23649000 - 23649049
Alignment:
Q  4 aattacatttccgtagcttcgcacccagctgatattaaagaattcaaata 53  Q
    |||| ||||||| |||||| |||||| |||||||||||||||||||||||    
T  23649000 aattccatttccatagctttgcaccctgctgatattaaagaattcaaata 23649049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 23734630 - 23734679
Alignment:
Q  4 aattacatttccgtagcttcgcacccagctgatattaaagaattcaaata 53  Q
    |||| ||||||| |||||| |||||| |||||||||||||||||||||||    
T  23734630 aattccatttccatagctttgcaccctgctgatattaaagaattcaaata 23734679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 23741822 - 23741871
Alignment:
Q  4 aattacatttccgtagcttcgcacccagctgatattaaagaattcaaata 53  Q
    |||| ||||||| |||||| |||||| |||||||||||||||||||||||    
T  23741822 aattccatttccatagctttgcaccctgctgatattaaagaattcaaata 23741871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 23734659 - 23734720
Alignment:
Q  203 tgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagca 264  Q
    |||||||||||| || |||||||||   |||||||||||||  ||||||| |||||||||||    
T  23734659 tgatattaaagaattcaaatatgcatttagaaactaaaattgagaaacttaaatcaaaagca 23734720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 23741851 - 23741912
Alignment:
Q  203 tgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagca 264  Q
    |||||||||||| || |||||||||   |||||||||||||  ||||||| |||||||||||    
T  23741851 tgatattaaagaattcaaatatgcatttagaaactaaaattgagaaacttaaatcaaaagca 23741912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 73 - 248
Target Start/End: Original strand, 52805725 - 52805902
Alignment:
Q  73 tgcaaagactatgatacataaagagaactagaatgaactcttgtgcgaatcgaactgaaggagtctcttccatacctctagtcaggatagtaagcaaccc 172  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||| |||||||| ||||||||||| |||||| ||||||| |||||||||||||||||    
T  52805725 tgcaaagactatgatacagaaagagaactagaaggaattcttgtgcaaatcgaacggaaggagtctcctccataactctagttaggatagtaagcaaccc 52805824  T
Q  173 ctctctcccagcaggctgctgtttagaaattgata--ttaaagatttaaaatatgcacaaagaaactaaaattctgaa 248  Q
    ||||||||||||    ||||||||||||| |||||  ||||| | |||||||||||||||||||||||||||| ||||    
T  52805825 ctctctcccagccccttgctgtttagaaactgatattttaaacaattaaaatatgcacaaagaaactaaaattgtgaa 52805902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 268
Target Start/End: Complemental strand, 53288076 - 53287881
Alignment:
Q  73 tgcaaagactatgatacataaagagaactagaatgaactcttgtgcgaatcgaactgaaggagtctcttccatacctctagtcaggatagtaagcaaccc 172  Q
    ||||||| | |||||||| ||||||||||||||  || ||||||||||||||| | |||||||||||     || |||||| ||||||||||||||||||    
T  53288076 tgcaaaggcaatgatacaaaaagagaactagaacaaattcttgtgcgaatcgagcggaaggagtctcactggtaactctagccaggatagtaagcaaccc 53287977  T
Q  173 ctctctcccagcaggctgctgtttagaaattgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcattgc 268  Q
     ||| |||||||   | ||||||||||||||| |||||||||||| |||||||||||||||||| | |||| ||||||| ||||||||||||||||    
T  53287976 ttctttcccagcccccagctgtttagaaattgttattaaagatttgaaatatgcacaaagaaacgagaattgtgaaactagaatcaaaagcattgc 53287881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 52545817 - 52545773
Alignment:
Q  193 gtttagaaattgatattaaagatttaaaatatgcacaaagaaact 237  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||    
T  52545817 gtttagaaattgatattaaagaattagaatatgcacaaagaaact 52545773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 52805574 - 52805639
Alignment:
Q  203 tgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcattgc 268  Q
    ||||||||||||||| |||||||||   ||||||| | ||| | ||||||||||||||||||||||    
T  52805574 tgatattaaagatttcaaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgc 52805639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 268
Target Start/End: Original strand, 11841737 - 11841932
Alignment:
Q  73 tgcaaagactatgatacataaagagaactagaatgaactcttgtgcgaatcgaactgaaggagtctcttccatacctctagtcaggatagtaagcaaccc 172  Q
    ||||||| | |||||||| ||||||||||||||  || ||||||||||||||||| |||||||||||     || |||||| ||||||||||||||||||    
T  11841737 tgcaaaggcaatgatacaaaaagagaactagaacaaattcttgtgcgaatcgaacggaaggagtctcactggtaactctagccaggatagtaagcaaccc 11841836  T
Q  173 ctctctcccagcaggctgctgtttagaaattgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcattgc 268  Q
     ||| |||||||   | ||||||||||||||| |||||||||||| |||||||||||||||||| | |||| ||||||| ||||||||||||||||    
T  11841837 ttctttcccagcccccagctgtttagaaattgttattaaagatttgaaatatgcacaaagaaacgagaattgtgaaactagaatcaaaagcattgc 11841932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 34106775 - 34106729
Alignment:
Q  219 aaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcat 265  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  34106775 aaatatgaacaaggaaactaaaattctgaaacttgaatcaaaagcat 34106729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 34135862 - 34135900
Alignment:
Q  229 aaagaaactaaaattctgaaacttgaatcaaaagcattg 267  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  34135862 aaagaaactaaaattgtgaaacttgaatcaaaagcattg 34135900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 34168367 - 34168325
Alignment:
Q  219 aaatatgcacaaagaaactaaaattctgaaacttgaatcaaaa 261  Q
    ||||||| ||||||||||||||||| |||||||||||||||||    
T  34168367 aaatatgaacaaagaaactaaaattgtgaaacttgaatcaaaa 34168325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 34138860 - 34138898
Alignment:
Q  229 aaagaaactaaaattctgaaacttgaatcaaaagcattg 267  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  34138860 aaagaaactaaaactgtgaaacttgaatcaaaagcattg 34138898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 34119103 - 34119034
Alignment:
Q  200 aattgatattaaagatttaaaatatgcacaaagaaact-aaaattctgaaacttgaatcaaaagcattgc 268  Q
    |||| ||||||||||  | ||||||| ||||||||| | |||||| ||||||||||||||||| ||||||    
T  34119103 aattaatattaaagaactcaaatatgaacaaagaaaattaaaattgtgaaacttgaatcaaaatcattgc 34119034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 34146262 - 34146193
Alignment:
Q  200 aattgatattaaagatttaaaatatgcacaaagaaact-aaaattctgaaacttgaatcaaaagcattgc 268  Q
    |||| ||||||||||  | ||||||| ||||||||| | |||||| ||||||||||||||||| ||||||    
T  34146262 aattaatattaaagaactcaaatatgaacaaagaaaattaaaattgtgaaacttgaatcaaaatcattgc 34146193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 34158878 - 34158809
Alignment:
Q  200 aattgatattaaagatttaaaatatgcacaaagaaact-aaaattctgaaacttgaatcaaaagcattgc 268  Q
    |||| ||||||||||  | ||||||| ||||||||| | |||||| ||||||||||||||||| ||||||    
T  34158878 aattaatattaaagaactcaaatatgaacaaagaaaattaaaattgtgaaacttgaatcaaaatcattgc 34158809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 28711108 - 28711040
Alignment:
Q  200 aattgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcattgc 268  Q
    |||| ||||||||||  | ||||||| |||| ||||||| || | |||||||||||||||||| |||||    
T  28711108 aattaatattaaagaactcaaatatgaacaaggaaactagaagtgtgaaacttgaatcaaaagtattgc 28711040  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 34091920 - 34091888
Alignment:
Q  233 aaactaaaattctgaaacttgaatcaaaagcat 265  Q
    ||||||||||| |||||||||||||||||||||    
T  34091920 aaactaaaattgtgaaacttgaatcaaaagcat 34091888  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 34114586 - 34114542
Alignment:
Q  222 tatgcacaaagaaactaaaattctgaaacttgaatcaaaagcatt 266  Q
    |||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  34114586 tatgaacaaagaaactaaaattgtgaaacttgaaacaaaaacatt 34114542  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 268
Target Start/End: Original strand, 48430719 - 48430914
Alignment:
Q  75 caaagactatgatacataaagagaactagaatgaactcttgtgcgaatcgaactgaaggagtctcttccatacctctagtcaggatagtaagcaacccct 174  Q
    |||||||||||||| | |||||||||||||| ||| || | || |||||||||   |||  |||| ||| || |||||| ||||||||| |||||  | |    
T  48430719 caaagactatgatatagaaagagaactagaacgaattcctttgtgaatcgaacatgaggtttctcctccttaactctagccaggatagtcagcaatgctt 48430818  T
Q  175 ctctcccagcaggctgctgttt--agaaattgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcattgc 268  Q
      ||||||||   |||||| ||  | |||| ||||| ||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  48430819 tactcccagccacctgctggtttaaaaaatcgatatcaaagaataaaaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgc 48430914  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 38648626 - 38648694
Alignment:
Q  200 aattgatattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcattgc 268  Q
    |||| |||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  38648626 aattaatattaaagaattcaaatatgaacaaagaaactaaaattgtgaaacttgaatcaaaagcattgc 38648694  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 4382960 - 4382903
Alignment:
Q  206 tattaaagatttaaaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagc 263  Q
    ||||||||| || ||||||||||| ||||||| || || ||||||||| |||||||||    
T  4382960 tattaaagaattcaaatatgcacatagaaactgaatttgtgaaacttgtatcaaaagc 4382903  T

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Target: scaffold1113 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 1838 - 1886
Alignment:
Q  219 aaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcattg 267  Q
    ||||||| ||||||||||||||| | | ||||||||||||||| |||||    
T  1838 aaatatgaacaaagaaactaaaactgtaaaacttgaatcaaaatcattg 1886  T

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Target: scaffold0961 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 1779 - 1731
Alignment:
Q  219 aaatatgcacaaagaaactaaaattctgaaacttgaatcaaaagcattg 267  Q
    ||||||| ||||||||||||||| | | ||||||||||||||| |||||    
T  1779 aaatatgaacaaagaaactaaaactgtaaaacttgaatcaaaatcattg 1731  T

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Target: scaffold0620 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 7254 - 7222
Alignment:
Q  233 aaactaaaattctgaaacttgaatcaaaagcat 265  Q
    ||||||||||| |||||||||||||||||||||    
T  7254 aaactaaaattgtgaaacttgaatcaaaagcat 7222  T

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