View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16584_low_8 (Length: 242)
Name: NF16584_low_8
Description: NF16584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16584_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 48007474 - 48007261
Alignment:
| Q |
18 |
aaagcttcccctcctcctttccttgcaaacccccttctacgaactcaaagtaatccttgtaattacgcttgtaataactatcaaccctctgccacacaca |
117 |
Q |
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| T |
48007474 |
aaagcttcccctcctcctttccttgcaaacccccttctacgaactcaaagtaatccttgtaattacgcttgtaataactatcaaccctctgccacacaca |
48007375 |
T |
|
| Q |
118 |
aagactgtgattaaattcaatactgaataatgacatactacaacataaaattaaataccctgctttgagagcattacttacctctttgtcatttttctcc |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48007374 |
aagactgtgattaaattcaatactaaataatgacatactacaacataaaattaaataccctgcttttagagcattacttacctctttgtcatttttctcc |
48007275 |
T |
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| Q |
218 |
ttgttttcctctgt |
231 |
Q |
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|||||||||||||| |
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| T |
48007274 |
ttgttttcctctgt |
48007261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 1604081 - 1603873
Alignment:
| Q |
18 |
aaagcttcccctcctcctttccttgcaaacccccttctacgaactcaaagtaatccttgtaattacgcttgtaataactatcaaccctctgccacacaca |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1604081 |
aaagcttcccctcctcctttgcttgcaaacccccttctatgaactcaaagtaatctttgtaattacgcttgtaattactatcaaccctctgccacacaca |
1603982 |
T |
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| Q |
118 |
aagactgtgattaaattcaatactgaataatgacatactacaacataaaattaaataccctgctttgagagcattacttacctctttgtcatttttctcc |
217 |
Q |
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|| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||||||| |
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| T |
1603981 |
aaaactgtgattaaattgaatactaaat-atgacatactacaacataaaattaaatacaccactttgagtgtgttacttacctctttgtcatttttctcc |
1603883 |
T |
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| Q |
218 |
ttgttttcct |
227 |
Q |
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|||||||||| |
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| T |
1603882 |
ttgttttcct |
1603873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 1604337 - 1604389
Alignment:
| Q |
39 |
cttgcaaacccccttctacgaactcaaagtaatccttgtaattacgcttgtaa |
91 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
1604337 |
cttgcaaacccccttctatgaactcaaagtaatccttgtaattacgctagtaa |
1604389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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