View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_high_14 (Length: 329)
Name: NF16585_high_14
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 3242864 - 3243165
Alignment:
| Q |
16 |
tttatttcgtaatgttgtattaattattcgtttctatggttggtaggtgcttgctgaaaagcttccggaacttttagatttctccaaagacctggtcaat |
115 |
Q |
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| T |
3242864 |
tttatttcgtaatgttgtattaattattcgtttctatggttggtaggtgcttgctgaaaagcttccggaacttttagatttctccaaagacctggtcaat |
3242963 |
T |
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| Q |
116 |
ttggagggtgcaaccaaggtatctttgtttattcttctgttatatcatatggttcctgtttattctcatttggattttggtgtatgctgagttacaatga |
215 |
Q |
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| T |
3242964 |
ttggagggtgcaaccaaggtatctttgtttattcttctgttatatcatatggttcctgtttattctcatttggattttggtgtatgctgagttacaatga |
3243063 |
T |
|
| Q |
216 |
tgtatttccatacagatacaattgaaatatttggcagaagaaatgcaagctattagtaaaggtctggagaaagtaattcaagaattgtcggcatcagaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3243064 |
tgtatttccatacagatacaattgaaatatttggcagaagaaatgcaagctattagtaaaggactggagaaagtaattcaagaattgtcggcatcagaga |
3243163 |
T |
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| Q |
316 |
at |
317 |
Q |
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|| |
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| T |
3243164 |
at |
3243165 |
T |
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