View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16585_high_15 (Length: 306)

Name: NF16585_high_15
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16585_high_15
NF16585_high_15
[»] chr7 (1 HSPs)
chr7 (1-291)||(42217636-42217927)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 42217927 - 42217636
Alignment:
Q  1 attaattctccaataataattatgattatgcat-atatccaatattgtggaatttaattgaatgcagaggaggagaatgtggtatctgtgtttccaaata 99  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42217927 attaattctccaataataattatgattatgcattatatccaatattgtggaatttaattgaatgcagaggaggagaatgtggtatctgtgtttccaaata 42217828  T
Q  100 cataccataaactacacacaacaaggtcatgggatttcttaggaatgcccctaaaggtgaagagaaatcccaacatagaaagtcacatcattataggcgt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42217827 cataccataaactacacacaacaaggtcatgggatttcttaggaatgcccctaaaggtgaagagaaatcccaacatagaaagtcacatcattataggcgt 42217728  T
Q  200 gttagacacaggtatatgtatatatagattaataagaaaatatacatttctcggataagtataacaaaaatgtattgtatagtataataaat 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42217727 gttagacacaggtatatgtatatatagattaataagaaaatatacatttctcggataagtataacaaaaatgtattgtatagtataataaat 42217636  T

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