View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_high_18 (Length: 250)
Name: NF16585_high_18
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3243199 - 3243438
Alignment:
| Q |
1 |
caacctatagcaggtcatctaaattcttcaatcagattgaactgatctaaacttctaaaatctgatgaatttggattattacccttctgttgtttgctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3243199 |
caacctatagcaggtcatctaaattcttcaatcagattgaactgatctaaacttctaaaatctgatgaatttggattattacccttctgttgtttgctac |
3243298 |
T |
|
| Q |
101 |
ttatgatcaagtatttagctttactataa-nnnnnnnnnactgtgatgttcagattctgaaagaatttcttagtgatgctgaagctgaagtgaggtcttt |
199 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3243299 |
ttatgatcaagtatttagctttactataatattttttttactgtgatgttcagattctgaaagaatttcttagtgatgctgaagctgaagtgaggtcttt |
3243398 |
T |
|
| Q |
200 |
ggctcagctttataccaatgtggtatggattttggttctt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3243399 |
ggctcagctttataccaatgtggtatggattttggttctt |
3243438 |
T |
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