View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_high_21 (Length: 227)
Name: NF16585_high_21
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_high_21 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2792378 - 2792152
Alignment:
| Q |
1 |
aacaaaataaaaatgataaaccatagagaacactattccctccctaatcataagtttaaccaccaatgacctttttacaccgttaggttcaaatgaaaaa |
100 |
Q |
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| T |
2792378 |
aacaaaataaaaatgataaaccatagagaacactattccctccctagtcataagtttaaccaccaatgacctttttacccctttaggttcaaatgaaaaa |
2792279 |
T |
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| Q |
101 |
agagtttgattcaggagaaaaagcacaaaactatacttcgaaactgcactaaatttcccatacacttcttatgactcgttagtatttgtttaccaaagat |
200 |
Q |
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| T |
2792278 |
agagtttgattcaggagaaaaagcacaaaactatacttcgaaactgcactaaatttcccatacacttcttatgactcgttagtatttgtttaccaaagat |
2792179 |
T |
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| Q |
201 |
gcaaatcagcagaaaaagcacaaaact |
227 |
Q |
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| T |
2792178 |
gcaaatcagcagaaaaagcacaaaact |
2792152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 2782595 - 2782489
Alignment:
| Q |
134 |
tacttcgaaactgcactaaatttcccat------acacttcttatgactcg-------ttagtatttgtttaccaaagatgcaaatcagcagaaaaagca |
220 |
Q |
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| T |
2782595 |
tacttcgaaactgcactaaatttcccatgaatgtacacttcttatgactcgactggagttagtatttgtttaccaaagatgcaaatcagcagaaaaagca |
2782496 |
T |
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| Q |
221 |
caaaact |
227 |
Q |
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| T |
2782495 |
caaaact |
2782489 |
T |
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