View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16585_high_3 (Length: 614)
Name: NF16585_high_3
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 5684796 - 5685400
Alignment:
| Q |
1 |
ttactcgaagcgaaacaagcccttggatactcacttgaaccatcagagacattacaggatgataatcctgctaaacagtttgatactttgttgtatttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5684796 |
ttactcgaagcgaaacaagcccttggatactcacttgaaccatcagagacattagaggatgataatcctgctaaacagtttgatactttgttgtatttgg |
5684895 |
T |
|
| Q |
101 |
cttttcagcatccttcgtgtgagagaacgaagcagaagcatgttaggtctgggcattccaggttgtttttcttagggcaatatgtgctggaattggcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5684896 |
cttttcagcatccttcgtgtgagagaacgaagcagaagcatgttaggtctgggcattccaggttgtttttcttagggcaatatgtgctggaattggcatt |
5684995 |
T |
|
| Q |
201 |
ggctgaattctttttgcagaggtatccgagggaattgcctggtccgatgagggagagagtttatgggttgattgggaaggagaatttgcctaaatggatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5684996 |
ggctgaattctttttgcagaggtatccgagggaattgcctggtccgatgagggagagagtttatgggttgattgggaaggagaatttgcctaaatggatt |
5685095 |
T |
|
| Q |
301 |
aaagctgccagtttacagaatttgatatttccttatgataatatggataagattgtgaggagggatagagaaggacctgtcaagtaagttataattttac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685096 |
aaagctgccagtttacagaatttgatatttccttatgataatatggataagattgtgaggagggatagagaaggacctgtcaagtaagttataattttac |
5685195 |
T |
|
| Q |
401 |
ttcaatgttcgcgtaggttataattttgatattatgttggtataagttcttattgtatgtaatgtaaaatttcatgtacttacaaattacaatagatttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685196 |
ttcaatgttcgcgtaggttataattttgatattatgttggtgtaagttcttattgcatgtaatgtaaaatttcatgtacttacaaattacaatagatttt |
5685295 |
T |
|
| Q |
501 |
gataactatgcacttacaccgccgttcaatcaaattttactatgtaggtatttgttgagatattttaataaacgatatcactttaccgagttagctatat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685296 |
gataactatgcacttacaccgccgttcaatcaaattttactatgtaggtatttgttgagatattttaataaacgatatcactttaccgagttagctatat |
5685395 |
T |
|
| Q |
601 |
tcttc |
605 |
Q |
| |
|
||||| |
|
|
| T |
5685396 |
tcttc |
5685400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 39772691 - 39772639
Alignment:
| Q |
61 |
gataatcctgctaaacagtttgatactttgttgtatttggcttttcagcatcc |
113 |
Q |
| |
|
||||| |||||||| || |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
39772691 |
gataaccctgctaagcaatttgatacgctgttgtatttggcgtttcagcatcc |
39772639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University