View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16585_high_6 (Length: 456)
Name: NF16585_high_6
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 14548525 - 14548082
Alignment:
| Q |
7 |
cgaagaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
106 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14548525 |
cgaacaatatgacgatggatcaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
14548426 |
T |
|
| Q |
107 |
aaccatgaagcttgcatgcaacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
14548425 |
aaccatgaagcttgcatgcaacatatctatgctctaccaattcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaagtatttatttacat |
14548326 |
T |
|
| Q |
207 |
ttgccaataaaaggcaaaggaactctctaggattctggttttagtaattcaaccttgtataataatattcgctaaattaatataaatacgataaaatgat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14548325 |
ttgccaataaaaggcaaaggaactctctaggattctggttttagtaattcaaccttgtataataatattcgctaaattaatataaatacaataaaatgat |
14548226 |
T |
|
| Q |
307 |
taatattgtacagtaaagtttagaccttatacacctcgctgaatcctccctttccaagaaggtttagaagggcgtaacgatggtttagaatctgaaaatt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
14548225 |
taatattgtacagtaaagtttagaccttatacacctcgctgaatcctccctttccaagaaggtttggaagggcgtaacgatggtttagaatctaaaaatt |
14548126 |
T |
|
| Q |
407 |
gttaaaccgtgaaccatcttcatcccgaatgcgtttcatctcac |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14548125 |
gttaaaccgtgaaccatcttcatcccgaatgcgtttcatttcac |
14548082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 37526002 - 37525562
Alignment:
| Q |
7 |
cgaagaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37526002 |
cgaacaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
37525903 |
T |
|
| Q |
107 |
aaccatgaagcttgcatgcaacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37525902 |
aaccatgaagcttgcatgcaacatatctatgctctaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacat |
37525803 |
T |
|
| Q |
207 |
ttgccaataaaaggcaaaggaactctctaggattctggttttagtaattcaaccttgtataataatattcgctaaattaatataaatacgataaaatgat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37525802 |
ttgccaataaaaggcaaaggaactctctaggattctggttttagtaactcaaccttgtat---aatattcgctaaattaatataaatacgataaaatgat |
37525706 |
T |
|
| Q |
307 |
taatattgtacagtaaagtttagaccttatacacctcgctgaatcctccctttccaagaaggtttagaagggcgtaacgatggtttagaatctgaaaatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37525705 |
taatattgtacagtaaagtttagaccttgtacacctcgctgaatcctccctttccaagaaggtttagaagggcgtaacgatggtttagaatctgaaaatt |
37525606 |
T |
|
| Q |
407 |
gttaaaccgtgaaccatcttcatcccgaatgcgtttcatctcac |
450 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37525605 |
gttgaaccgtgaaccatcttcatcccgaatgcgtttcatttcac |
37525562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 37690439 - 37689999
Alignment:
| Q |
7 |
cgaagaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37690439 |
cgaacaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
37690340 |
T |
|
| Q |
107 |
aaccatgaagcttgcatgcaacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37690339 |
aaccatgaagcttgcatgcaacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacat |
37690240 |
T |
|
| Q |
207 |
ttgccaataaaaggcaaaggaactctctaggattctggttttagtaattcaaccttgtataataatattcgctaaattaatataaatacgataaaatgat |
306 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37690239 |
ttgccaataaaaggcaacgaaactctctaggattctggttttagtaactcaaccttgtat---aatattcgctaaattaatataaatacgataaaatgat |
37690143 |
T |
|
| Q |
307 |
taatattgtacagtaaagtttagaccttatacacctcgctgaatcctccctttccaagaaggtttagaagggcgtaacgatggtttagaatctgaaaatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37690142 |
taatattgtacagtaaagtttagaccttgtacacctcgctgaatcctccctttccaagaaggtttagaagggcgtaacgatggtttagaatctgaaaatt |
37690043 |
T |
|
| Q |
407 |
gttaaaccgtgaaccatcttcatcccgaatgcgtttcatctcac |
450 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
37690042 |
gttgaaccgtgaaccatcatcatcccgaatgcgtttcatttcac |
37689999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 37588163 - 37587723
Alignment:
| Q |
7 |
cgaagaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37588163 |
cgaacaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
37588064 |
T |
|
| Q |
107 |
aaccatgaagcttgcatgcaacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37588063 |
aaccatgaagcttgcatgcaacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacat |
37587964 |
T |
|
| Q |
207 |
ttgccaataaaaggcaaaggaactctctaggattctggttttagtaattcaaccttgtataataatattcgctaaattaatataaatacgataaaatgat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37587963 |
ttgccaataaaaggcaaaggaactctctaggattctggttttagtaactcaaccatgt---ataatattcgctaaattaatataaatatgataaaatgat |
37587867 |
T |
|
| Q |
307 |
taatattgtacagtaaagtttagaccttatacacctcgctgaatcctccctttccaagaaggtttagaagggcgtaacgatggtttagaatctgaaaatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37587866 |
taatattgtacagtaaagtttagaccttgtacacctcgctgaatcctcactttccaaaaaggtttagaagggcgtaacgatggtttagaatctgaaaatt |
37587767 |
T |
|
| Q |
407 |
gttaaaccgtgaaccatcttcatcccgaatgcgtttcatctcac |
450 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37587766 |
gttgaaccgtgaaccatcttcatcccgaatgcgtttcatttcac |
37587723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 37618737 - 37618297
Alignment:
| Q |
7 |
cgaagaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
106 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37618737 |
cgaacaatatgacgatgaaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
37618638 |
T |
|
| Q |
107 |
aaccatgaagcttgcatgcaacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
37618637 |
caccatgaagcttgcatgcaacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaagtatttatttacat |
37618538 |
T |
|
| Q |
207 |
ttgccaataaaaggcaaaggaactctctaggattctggttttagtaattcaaccttgtataataatattcgctaaattaatataaatacgataaaatgat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37618537 |
ttgccaataaaaggcaaaggaactctctaggattttggttttagtaactcaaccttgtat---aatattcacaaaattaatataaatacgataaaatgat |
37618441 |
T |
|
| Q |
307 |
taatattgtacagtaaagtttagaccttatacacctcgctgaatcctccctttccaagaaggtttagaagggcgtaacgatggtttagaatctgaaaatt |
406 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| | | | ||||||||||||| ||||||||| || |
|
|
| T |
37618440 |
taatattgaacagtaaagtttagaccttgtacacctcgctatagcctccctttccaagaaggtttaggaagacataacgatggtttaaaatctgaaagtt |
37618341 |
T |
|
| Q |
407 |
gttaaaccgtgaaccatcttcatcccgaatgcgtttcatctcac |
450 |
Q |
| |
|
||| ||| ||||| ||||||||||| | ||||||||||| |||| |
|
|
| T |
37618340 |
gttgaactgtgaagcatcttcatccagtatgcgtttcatttcac |
37618297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 37794505 - 37794065
Alignment:
| Q |
7 |
cgaagaatatgacgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
106 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37794505 |
cgaacaatatgacgatgaaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcattta |
37794406 |
T |
|
| Q |
107 |
aaccatgaagcttgcatgcaacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
37794405 |
caccatgaagcttgcatgcaacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaagtatttatttacat |
37794306 |
T |
|
| Q |
207 |
ttgccaataaaaggcaaaggaactctctaggattctggttttagtaattcaaccttgtataataatattcgctaaattaatataaatacgataaaatgat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37794305 |
ttgccaataaaaggcaaaggaactctctaggattttggttttagtaactcaaccttgtat---aatattcacaaaattaatataaatacgataaaatgat |
37794209 |
T |
|
| Q |
307 |
taatattgtacagtaaagtttagaccttatacacctcgctgaatcctccctttccaagaaggtttagaagggcgtaacgatggtttagaatctgaaaatt |
406 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| | || |||||||||||||||||||| | | ||||||||||||||| ||||||||| || |
|
|
| T |
37794208 |
taatattgaacagtaaagtttagaccttgtacacctcgctatagcccccctttccaagaaggtttaggaagacgtaacgatggtttaaaatctgaaagtt |
37794109 |
T |
|
| Q |
407 |
gttaaaccgtgaaccatcttcatcccgaatgcgtttcatctcac |
450 |
Q |
| |
|
||| ||| ||||| |||||||| || | ||||||||||| |||| |
|
|
| T |
37794108 |
gttgaactgtgaagcatcttcacccagtatgcgtttcatttcac |
37794065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 37787746 - 37787328
Alignment:
| Q |
19 |
cgatggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagct |
118 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37787746 |
cgatggaccaaggtcttgtgaatatgacactctcgaattgcatgcctcatgtaacttagcttcttctcttcagcccattgagcatttaaaccatgaagct |
37787647 |
T |
|
| Q |
119 |
tgcatgcaacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacatttgccaataaaa |
218 |
Q |
| |
|
|||| || ||||||| ||| |||| |||||||||||||||| ||||||| |||||| |||| ||||| |||||| ||||||| || ||| ||| |
|
|
| T |
37787646 |
tgcaggcgacatatccatgatccagtaagtcaaaagcctgctagaaatttcttactttaaattactgcagaaaggtgtttatttgcaattgacaa----- |
37787552 |
T |
|
| Q |
219 |
ggcaaaggaactctctaggattctggttttagtaattcaaccttgtataataatattcgctaaattaatataaatacgataaaatgattaatattgtaca |
318 |
Q |
| |
|
||||||||||| | ||||||||||||| ||| |||||| ||||||||| || | |||| ||||| ||||| ||| |||| ||| |||||||| |
|
|
| T |
37787551 |
---aaaggaactct--aagattctggttttactaactcaaccctgtataata---tttgataaagtaatacaaatatgatcaaataattgctattgtact |
37787460 |
T |
|
| Q |
319 |
gtaaagtttagaccttatacacctcgctgaatcctccctttccaagaaggtttagaagggcgtaacgatggtttagaatctgaaaattgttaaaccgtga |
418 |
Q |
| |
|
||||||| | ||||| |||||||||| ||||||||||||||| |||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37787459 |
ctaaagttcaaaccttgtacacctcgccgaatcctccctttccgagaaggtttaaaagggcataacgattgtttagaatctgaaaattgttaaaccgtga |
37787360 |
T |
|
| Q |
419 |
accatcttcatcccgaatgcgtttcatctcac |
450 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |
|
|
| T |
37787359 |
accatcttcatcccgtatgcgtttcatttcac |
37787328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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