View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_low_12 (Length: 355)
Name: NF16585_low_12
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 10676271 - 10676607
Alignment:
| Q |
1 |
caatccgaaccaagtaaatttggggaagttatcatgtccaaccaaaaacaatcactatggtttgttgttgtattcaagagctatgggaatggaacttatt |
100 |
Q |
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| T |
10676271 |
caatccgaaccaagtaaatttggggaagttatcatgtccaaccaaaaacaatcactatggtttgttgttgtattcaagagctatgggaatggaacttatt |
10676370 |
T |
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| Q |
101 |
tgcggagaagctaatggagcaaagcaatggaagatgctttgcttatgtagaactcttaaatctcaatggattaacnnnnnnnnnnnncaaagggtcgctt |
200 |
Q |
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| T |
10676371 |
tgtggagaagctaatggagcaaagcaatggaagatgctttgcttatgtagaactcttaaatctcaatggattaac----tatatatacaaagggtcgctt |
10676466 |
T |
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| Q |
201 |
agatatagtggcagttttgacgtgttataggttttttgttgacataaaaaatgacttacaaactgagctagacttttatggtcacaaacacaaatgtttt |
300 |
Q |
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| T |
10676467 |
agatatagtggcagttttgacgtgttataggttttttgttgacataaaaaatgacttacaaactgagcaagacttttatggtcacaaacacaaatgtttt |
10676566 |
T |
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| Q |
301 |
ggatttagaagtgttgctaaatcgaaaaaatttgtgcttgt |
341 |
Q |
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| T |
10676567 |
ggatttagaagtgttggtaaatcgaaaatttttgtgcttgt |
10676607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 10672673 - 10672793
Alignment:
| Q |
15 |
taaatttggggaagttatcatgtccaaccaaaaacaatcactatggtttgttgttgtattcaagagctatgggaatggaac---ttatttgcggagaagc |
111 |
Q |
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| T |
10672673 |
taaatttggggtagatatcatgtccaacaaaaaa-aatcactgt--tttgttgttatattcaagagctatgggaatggagcctattatttgtgaacaagc |
10672769 |
T |
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| Q |
112 |
taatggagcaaagcaatggaagat |
135 |
Q |
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| T |
10672770 |
taatggagcaaagcaatggaagat |
10672793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 10672815 - 10672902
Alignment:
| Q |
215 |
ttttgacgtgttataggttttttgtt---gacataaaaaatgacttacaaactgagctagacttttatggtcacaaacacaaatgtttt |
300 |
Q |
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| T |
10672815 |
tttttacgtgttataggttttttttttttgacataaaaaatgacttacaaacatagctagacttatat-gtcacaaacataaatgtttt |
10672902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 28506375 - 28506313
Alignment:
| Q |
83 |
atgggaatggaacttatttgcggagaagctaatggagcaaagcaatggaagatgctttgctta |
145 |
Q |
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| T |
28506375 |
atgggaatggaaccaatttgtggacaagcttatggagcaaaacaatggaagatacttggctta |
28506313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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