View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16585_low_13 (Length: 351)

Name: NF16585_low_13
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16585_low_13
NF16585_low_13
[»] chr2 (28 HSPs)
chr2 (14-335)||(10340544-10340865)
chr2 (50-312)||(10370959-10371239)
chr2 (14-311)||(9287688-9287994)
chr2 (23-253)||(10334831-10335060)
chr2 (14-202)||(10351263-10351443)
chr2 (16-202)||(9318648-9318834)
chr2 (37-201)||(10346819-10346979)
chr2 (16-253)||(9285037-9285270)
chr2 (32-253)||(9326528-9326756)
chr2 (17-202)||(9273155-9273337)
chr2 (38-202)||(9271827-9271993)
chr2 (27-142)||(8574422-8574538)
chr2 (16-201)||(9291061-9291243)
chr2 (85-202)||(11425288-11425401)
chr2 (35-202)||(9315189-9315352)
chr2 (18-187)||(9068973-9069136)
chr2 (255-308)||(10351509-10351562)
chr2 (149-201)||(7116951-7117003)
chr2 (16-187)||(9076575-9076740)
chr2 (257-312)||(8574237-8574292)
chr2 (254-312)||(9061951-9062009)
chr2 (258-308)||(9295433-9295483)
chr2 (107-202)||(9062087-9062182)
chr2 (15-108)||(7117004-7117098)
chr2 (16-73)||(9062204-9062262)
chr2 (254-335)||(9068794-9068872)
chr2 (255-312)||(9273937-9273994)
chr2 (248-292)||(9315419-9315463)
[»] chr4 (2 HSPs)
chr4 (18-253)||(26574068-26574295)
chr4 (254-301)||(26574310-26574357)
[»] chr3 (1 HSPs)
chr3 (16-200)||(37461496-37461677)
[»] chr8 (1 HSPs)
chr8 (94-335)||(41968145-41968408)
[»] scaffold0667 (1 HSPs)
scaffold0667 (89-251)||(1726-1891)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 10340544 - 10340865
Alignment:
Q  14 agacaattcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10340544 agacaattcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaacctttaccacataccgaggtgactaattccatcataagaaacaac 10340643  T
Q  114 tggagcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgctgcgggaaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  10340644 tggagcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagttgctgcaggaaaa 10340743  T
Q  214 aatgaactcatcgaagtatgttcaaaaatatcacaaaagaccatgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10340744 aatgaactcatcgaagtatgttcaaaaatatcacaaaagaccatgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttca 10340843  T
Q  314 acaacaaatatcttctctttac 335  Q
    ||||||||||||||||||||||    
T  10340844 acaacaaatatcttctctttac 10340865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 50 - 312
Target Start/End: Original strand, 10370959 - 10371239
Alignment:
Q  50 tccatcattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaactggagcatcctgtttcagctgcacttcactcacagg 149  Q
    |||| |||||||||||||||||||   ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    |    
T  10370959 tccaacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacac----g 10371054  T
Q  150 tccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg---ctgcggg----aaaaaatgaa-ctcatcgaagtatgttcaaaaa 241  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||    |||||||||| |||||| |||||  ||||||||    
T  10371055 ttcttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaaaaaaaaatgaatctcatcaaagtaacttcaaaaa 10371154  T
Q  242 tatcacaaaag--------------accatgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttc 312  Q
     ||||||||||              ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  10371155 catcacaaaagaatagatgataaaaaccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttc 10371239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 9287688 - 9287994
Alignment:
Q  14 agacaattcaaaaagagggataaaaatgggtgcaactccat---cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaac 110  Q
    ||||||||||||||||| ||||||||||||||||||| |||   ||||||||||||| |||||  ||||   | |||||||||| ||||||| |||||||    
T  9287688 agacaattcaaaaagagagataaaaatgggtgcaactacatattcattatcaattcagcctttcccacaagacaaggtgactaactccatcacaagaaac 9287787  T
Q  111 aactggagcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg---ctgcg 207  Q
    |||| ||||||||||||||||||||||     |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||    || |    
T  9287788 aacttgagcatcctgtttcagctgcac----atcacaggtacttccatccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttgtg 9287883  T
Q  208 ggaaaaaa----tgaa-ctcatcgaagtatgttcaaaaata--tcacaaaagaccatgcttttgaaaagaactatgcataaatttgtagtaagttcatgg 300  Q
    ||||||||    |||| |||||| ||||  |||||| ||||  |  ||||| || | ||||||| || |||||||||||||||||| ||||| |||||||    
T  9287884 ggaaaaaaaaattgaatctcatcaaagttagttcaacaatagttggcaaaaaactaagcttttgcaaggaactatgcataaatttggagtaatttcatgg 9287983  T
Q  301 taggccaattt 311  Q
    |||||||||||    
T  9287984 taggccaattt 9287994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 10334831 - 10335060
Alignment:
Q  23 aaaaagagggataaaaatgggtgcaactccatcattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaactggagcatc 122  Q
    |||||||||||||||| ||||| |  || || |||||||||||||||||||   ||| ||| |||||||||||||||||| |||||||||||||||||||    
T  10334831 aaaaagagggataaaa-tgggtacgcctacaacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatc 10334929  T
Q  123 ctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaag---tcgctgcgggaaaaaatgaa 219  Q
    |||||||||||||||||||| |    || |||||||||||||||||||||||||||||||||||||||||||| |||   || ||| ||  |||||||||    
T  10334930 ctgtttcagctgcacttcacac----gttcttccttccatcccttacagtctcaatttaaatcctcgggacaagaagtcatccctgtggagaaaaatgaa 10335025  T
Q  220 -ctcatcgaagtatgttcaaaaatatcacaaaaga 253  Q
     |||||  ||||| |||||| ||||||||||||||    
T  10335026 tctcataaaagtaagttcaacaatatcacaaaaga 10335060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 10351263 - 10351443
Alignment:
Q  14 agacaattcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaac 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||| ||||||  |||||||||| ||||||||||    
T  10351263 agacaaatcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaacctttcctacaaaccaaggtgagcaattccatcacaagaaacaac 10351362  T
Q  114 tggagcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg 202  Q
     | |||||||| ||||||||||||||||||    ||||||||||    ||||||||| |||||||||||||||||  ||||| ||||||    
T  10351363 agaagcatcctatttcagctgcacttcact----ggtccttcct----tcccttacaatctcaatttaaatcctccagacaagaagtcg 10351443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 9318648 - 9318834
Alignment:
Q  16 acaattcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaact 114  Q
    ||||||||||| |||   |||||||||||||| |||||| ||||||||||||| |||||  |||| ||| ||||  |||||||||||| |||||||||||    
T  9318648 acaattcaaaatgagatgtaaaaatgggtgcagctccattcattatcaattcagcctttcccacaaaccaaggtttctaattccatcacaagaaacaact 9318747  T
Q  115 ggagcatcctgtttcagctgcacttcac-tcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg 202  Q
     ||| ||||||||||||||||  | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9318748 tgagtatcctgtttcagctgc--tgcacatcacaggtccttccttccatcccttacaatctcaatttaaatcctcgggacaagaagtcg 9318834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 10346819 - 10346979
Alignment:
Q  37 aaatgggtgcaactccatcattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaactggagcatcctgtttcagctgca 136  Q
    |||||| ||||  ||||||||||||||||||||||||  |||| ||| |||||||||||||||||| |||||||||| || || || |||||||||||||    
T  10346819 aaatggctgcacttccatcattatcaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaaccggtgcttcatgtttcagctgca 10346918  T
Q  137 cttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtc 201  Q
    ||    ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  10346919 ct----tcacaggtccttcctaccatcccttacaatctcaatttaaatcctcgggacaagaagtc 10346979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 9285270 - 9285037
Alignment:
Q  16 acaattcaaaaagagggataaaaatgggtgcaactccatca-ttatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaact 114  Q
    ||||||||||| |||  ||||||||| ||||| |||||| | ||||||||||||| |||  ||||     || ||||||||||||||| ||||||| |||    
T  9285270 acaattcaaaatgagatataaaaatgtgtgcagctccatgaattatcaattcaacatttcccaca-----agatgactaattccatcacaagaaactact 9285176  T
Q  115 ggagcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg---ctgcgggaa 211  Q
     ||||||| ||||||||||||||     |||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||   ||| | |||    
T  9285175 tgagcatcatgtttcagctgcac----atcacaggtccttccttccatcccttacaatctcaatttaaatcctccggacaagaagtcgtccctgtgagaa 9285080  T
Q  212 aaaatg-aactcatcgaagtatgttcaaaaatatcacaaaaga 253  Q
    |||||| | |||||| ||||| |||||| ||||| ||||||||    
T  9285079 aaaatgcatctcatcaaagtaagttcaacaatattacaaaaga 9285037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 9326528 - 9326756
Alignment:
Q  32 gataaaaatgggtgcaactccat-cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaactggagcatcctgtttca 130  Q
    |||||||||| ||||| |||||| ||||||| ||||||||| |  |||| ||| ||  |||||||||||||| ||||||||||| ||| ||||||| |||    
T  9326528 gataaaaatgagtgcagctccattcattatccattcaacctatcgcacaaaccaagcagactaattccatcacaagaaacaacttgagtatcctgtatca 9326627  T
Q  131 gctgcacttcac-tcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg---ctgcgg---gaaaaaatgaa-ctc 222  Q
    |||||  | ||| ||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||   ||| ||   |||||| |||| |||    
T  9326628 gctgc--tgcacatcacaggtccttccttctatcccttacaacctcaatttaaatcctcgggacaagaagtcgtccctgtggaaagaaaaactgaatctc 9326725  T
Q  223 atcgaagtatgttcaaaaatatcacaaaaga 253  Q
    ||||||||| |||||| ||||||||||||||    
T  9326726 atcgaagtaagttcaacaatatcacaaaaga 9326756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 9273155 - 9273337
Alignment:
Q  17 caattcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaactg 115  Q
    |||||||||| ||| || |||||||| |||| |||||| ||||||||||||||||||| || || ||| ||| |||||||||||| | ||||| |||||     
T  9273155 caattcaaaatgagagacaaaaatggatgcagctccattcattatcaattcaacctttctcgcaaaccaaggagactaattccataacaagaagcaactt 9273254  T
Q  116 gagcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg 202  Q
    ||||||| ||||  |||||||      |||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  9273255 gagcatcgtgttaaagctgca----tatcacaggtccttccttccatccctcacaatctcaatttaaatcctcgggacaagaagtcg 9273337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 9271827 - 9271993
Alignment:
Q  38 aatgggtgcaactccat---cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaac---tggagcatcctgtttcag 131  Q
    |||||||||||||||||   |||||||||||||||||||  |||| ||| ||| |||||||||||| | ||||||||||   | ||  ||||||||||||    
T  9271827 aatgggtgcaactccatattcattatcaattcaacctttcccacaaaccaaggagactaattccattacaagaaacaacaacttgattatcctgtttcag 9271926  T
Q  132 ctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg 202  Q
    ||||||     ||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  9271927 ctgcac----atcacatgtccttctttccatcccttacaatctcaatttaaatcctcgggacaagaagtcg 9271993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 8574538 - 8574422
Alignment:
Q  27 agagggataaaaatgggtgcaactccat-cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaactggagcatcctg 125  Q
    ||||||| ||||||||||||| |||||| |||| | ||||||||||||  |||| ||| |||||||||||||||||| ||||||||||| ||||||||||    
T  8574538 agagggagaaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctg 8574439  T
Q  126 tttcagctgcacttcac 142  Q
    |||||||||||| ||||    
T  8574438 tttcagctgcacatcac 8574422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 9291061 - 9291243
Alignment:
Q  16 acaattcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaac- 113  Q
    ||||||||||||||| ||  ||||||| |||| |||| | || |||||||||||||||   |||| ||| |||| ||||||||||||| || |||||||     
T  9291061 acaattcaaaaagagaga--aaaatggatgcagctcctttcaatatcaattcaaccttccccacaaaccaaggtaactaattccatcacaacaaacaact 9291158  T
Q  114 -tggagcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtc 201  Q
     | ||| ||||||||||||||||||     ||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||    
T  9291159 tttgagaatcctgtttcagctgcac----atcacaggcccttacttccatcccttacaatctcaatttaaatcctcgggacaagaagtc 9291243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 11425401 - 11425288
Alignment:
Q  85 aggtgactaattccatcataagaaacaactggagcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaat 184  Q
    |||||| ||||||| ||| ||||||||||| ||| ||||||||||||||||||     |||||||||| ||||||||||||||||| | |||||||||||    
T  11425401 aggtgattaattccttcacaagaaacaactcgagtatcctgtttcagctgcac----atcacaggtccatccttccatcccttacaatgtcaatttaaat 11425306  T
Q  185 cctcgggacaaaaagtcg 202  Q
    ||||||||||| ||||||    
T  11425305 cctcgggacaagaagtcg 11425288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 9315189 - 9315352
Alignment:
Q  35 aaaaatgggtgcaactccat-cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaactggagcatcctgtttcagct 133  Q
    ||||||| ||||| |||||| |||||||||||||||| ||  |||| ||| ||  |||||||||||||| ||||||||| | ||||||| ||||||||||    
T  9315189 aaaaatgagtgcagctccattcattatcaattcaaccattcccacaaaccaagcagactaattccatcacaagaaacaagttgagcatcatgtttcagct 9315288  T
Q  134 gcacttcac-tcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg 202  Q
    |  || ||| |||||||    ||| ||||||||||||| |||||||||||||||||||||||| ||||||    
T  9315289 g--ctacacatcacagg----tccctccatcccttacaatctcaatttaaatcctcgggacaagaagtcg 9315352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 9069136 - 9068973
Alignment:
Q  18 aattcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaactgg 116  Q
    ||||||||| |||  ||||||||||||||| || ||| | |||||||||||||||||  |||| ||| |||||||||||| ||||| ||||| ||||| |    
T  9069136 aattcaaaatgagccataaaaatgggtgcagcttcattctttatcaattcaacctttcccacaaaccaaggtgactaattacatcacaagaagcaacttg 9069037  T
Q  117 agcatcctgtttcagct-gcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcct 187  Q
    |||||| |||||||| | ||||     |||||||    ||||||||||||||||| ||||||||||||||||    
T  9069036 agcatcatgtttcagttggcac----atcacagg----tccttccatcccttacaatctcaatttaaatcct 9068973  T

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Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 10351509 - 10351562
Alignment:
Q  255 catgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaa 308  Q
    ||||||||||||| |||||||||||||||||| ||||  |||||||||||||||    
T  10351509 catgcttttgaaaggaactatgcataaatttggagtactttcatggtaggccaa 10351562  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 7117003 - 7116951
Alignment:
Q  149 gtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtc 201  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||| |||||    
T  7117003 gtccttccttccatcccttacaatctcaatttaaatcctttggacaagaagtc 7116951  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 9076740 - 9076575
Alignment:
Q  16 acaattcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaact 114  Q
    ||||||||||| |||  ||| |||||||||||  ||||| |||||||||||||||||||    || ||| |||||||||||| ||||| |||||||||||    
T  9076740 acaattcaaaatgagccatagaaatgggtgcagttccattcattatcaattcaacctttcctgcaaaccaaggtgactaattacatca-aagaaacaact 9076642  T
Q  115 ggagcatcc-tgtttcagctg-cacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcct 187  Q
      ||||||| | ||||||||| |||     |||||||    ||||||||||||||||| ||||||||||||||||    
T  9076641 ctagcatccatctttcagctgacac----atcacagg----tccttccatcccttacaatctcaatttaaatcct 9076575  T

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Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 8574292 - 8574237
Alignment:
Q  257 tgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttc 312  Q
    ||||||||||  |||||||||||||||||  ||||| |||||||||||||||||||    
T  8574292 tgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaatttc 8574237  T

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Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 9062009 - 9061951
Alignment:
Q  254 ccatgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttc 312  Q
    |||||||||||||   ||||||||||||||||| ||||| |||||||||||| ||||||    
T  9062009 ccatgcttttgaatgaaactatgcataaatttggagtaatttcatggtaggctaatttc 9061951  T

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Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 9295483 - 9295433
Alignment:
Q  258 gcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaa 308  Q
    |||||||||| ||||||||| |||||||| ||||| |||||||||||||||    
T  9295483 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 9295433  T

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Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 9062182 - 9062087
Alignment:
Q  107 aaacaactggagcatcctgtttcagctgcacttcactcacaggtccttccttccatcc----cttacagtctcaatttaaatcctcgggacaaaaagtcg 202  Q
    |||||||| ||||||| |||||||||||||| |||     ||||||||||||||||||    |||||| | ||| |||||||||||||||||| ||||||    
T  9062182 aaacaacttgagcatcttgtttcagctgcacatcat----aggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcg 9062087  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 7117098 - 7117004
Alignment:
Q  15 gacaattcaaaaagagggataaaaatgggtgcaactcca-tcattatcaattcaacctttatcacataccgaggtgactaattccatcataagaa 108  Q
    |||||||||||| ||| ||||||||||||  || ||||| ||||||| ||||||||| ||   ||| ||| || ||||||||||||||| |||||    
T  7117098 gacaattcaaaatgagagataaaaatgggcacagctccattcattattaattcaaccattccaacaaaccaagatgactaattccatcacaagaa 7117004  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 9062262 - 9062204
Alignment:
Q  16 acaattcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaaccttt 73  Q
    |||| |||||| ||| |||||||||||||||| | |||| |||||||||||||||||||    
T  9062262 acaactcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaaccttt 9062204  T

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Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 9068872 - 9068794
Alignment:
Q  254 ccatgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttcaacaacaaatatcttctctttac 335  Q
    |||| ||||||||| ||| ||||||||  |||| ||||| ||||||||||||||||||| | ||||| | ||||||||||||    
T  9068872 ccatacttttgaaaggaattatgcata--tttggagtaatttcatggtaggccaatttcta-aacaactttcttctctttac 9068794  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 9273937 - 9273994
Alignment:
Q  255 catgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttc 312  Q
    ||||||||||||| ||||||||| |||||||  | ||| ||||| |||||||||||||    
T  9273937 catgcttttgaaaggaactatgcttaaatttaaaataatttcattgtaggccaatttc 9273994  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 9315419 - 9315463
Alignment:
Q  248 aaaagaccatgcttttgaaaagaactatgcataaatttgtagtaa 292  Q
    |||| ||||||||||||||  |||||||| |||||||||||||||    
T  9315419 aaaaaaccatgcttttgaatggaactatgaataaatttgtagtaa 9315463  T

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Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 26574068 - 26574295
Alignment:
Q  18 aattcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaactgga 117  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||         ||| |||||||||||||||||| ||||||||||||||    
T  26574068 aattcaaaaagagggataaaaatgggtgcacctccatcattaccaattcaaccta--------accaaggtgactaattccatcacaagaaacaactgga 26574159  T
Q  118 gcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcg---ctgcgggaaaaa 214  Q
    |||||||||||||||||||||    |||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||   ||| ||||||||    
T  26574160 gcatcctgtttcagctgcact----tcacaggtccttccgtccatcgcttacagtctcaatttaaattctctggacaaaaagtcgtccctgtgggaaaaa 26574255  T
Q  215 atgaa-ctcatcgaagtatgttcaaaaatatcacaaaaga 253  Q
    ||||| |||||| ||||| |||||||||||||||||||||    
T  26574256 atgaatctcatcaaagtaagttcaaaaatatcacaaaaga 26574295  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 26574310 - 26574357
Alignment:
Q  254 ccatgcttttgaaaagaactatgcataaatttgtagtaagttcatggt 301  Q
    |||||||||| ||| |||||||||||||| ||| ||||||||||||||    
T  26574310 ccatgctttttaaaggaactatgcataaaattggagtaagttcatggt 26574357  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 37461496 - 37461677
Alignment:
Q  16 acaattcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaacctttatcacataccgaggtgactaattccatcataagaaacaact 114  Q
    ||||||||||| |||  ||| ||||| ||||| |||||| ||||||||||||||||||   |||| ||| ||| |||||||||||||| |||||||||||    
T  37461496 acaattcaaaatgagaaatacaaatgcgtgcagctccattcattatcaattcaaccttacccacaaaccaaggagactaattccatcacaagaaacaact 37461595  T
Q  115 ggagcatcctgtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagt 200  Q
     ||||| ||||||||||||||||     | |||||| |||||||||| |||||||| ||||||||||||||||| |||||| ||||    
T  37461596 tgagcaccctgtttcagctgcac----attacaggttcttccttccaccccttacaatctcaatttaaatcctccggacaagaagt 37461677  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 94 - 335
Target Start/End: Complemental strand, 41968408 - 41968145
Alignment:
Q  94 attccatcataagaaacaactggagcatcct-gtttcagctgcacttcactcacaggtccttccttccatcccttacagtctcaatttaaatcctcggga 192  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||     |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  41968408 attccatcagaagaaacaacttgagcatcctggtttcagctgcac----atcacaggtccttccttccatcccttacaatctcaatttaaatccttggga 41968313  T
Q  193 caaaaag---tcgctgcgggaaaaaatgaa-ctcatcgaagtatgttcaaaaatatcacaaaag-------------------accatgcttttgaaaag 269  Q
    ||| |||   || |||  | |||||||||| ||||| |||||| |||||| |||||||||||||                   ||||||||| ||||| |    
T  41968312 caagaagtcatccctgtcgaaaaaaatgaatctcattgaagtaagttcaacaatatcacaaaagaatagttgataaaaaaaaaaccatgcttctgaaagg 41968213  T
Q  270 aactatgcataaatttgtagtaagttcatggtaggccaatttc--aacaacaaatatcttctctttac 335  Q
    ||||||||||||||| | ||||| |||||||||||||||||||  |||||||| | ||||||||||||    
T  41968212 aactatgcataaattaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttac 41968145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 1726 - 1891
Alignment:
Q  89 gactaattccatcataagaaacaactggagcatcctgtttcagctgcacttcac-tcacaggtccttccttccatcccttacagtctcaatttaaatcct 187  Q
    |||||||||||| | ||||||||||| ||| || |||||||||||||  | ||| |||||| |||||| ||||| |||||||| ||||||||||||||||    
T  1726 gactaattccattacaagaaacaacttgagaattctgtttcagctgc--tgcacatcacagatccttcattccaacccttacaatctcaatttaaatcct 1823  T
Q  188 cgggacaaaaagtcg---ctgcgggaaaaaatgaa-ctcatcgaagtatgttcaaaaatatcacaaaa 251  Q
    | |||||| ||||||   |||  | |||||||||| |||||||||||| ||||||  |||||||||||    
T  1824 ccggacaagaagtcgtccctgtagaaaaaaatgaatctcatcgaagtaagttcaatgatatcacaaaa 1891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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