View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_low_14 (Length: 350)
Name: NF16585_low_14
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_low_14 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: scaffold0638 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 5017 - 4703
Alignment:
| Q |
18 |
attcttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttcata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5017 |
attcttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcacttatatcaaccgttgttccatcattggctgcttctttcata |
4918 |
T |
|
| Q |
118 |
aacttgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgtttc |
217 |
Q |
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|||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4917 |
aacttgatcaataggtcaagctc--gtttcctcatgcttctaaaactattgatttttgaatggctcaacaattctaacgtgcacatcttgtgcatgtttc |
4820 |
T |
|
| Q |
218 |
gccaataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagacaagatcatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4819 |
gccaataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagagaagatcatg |
4720 |
T |
|
| Q |
318 |
agtcttgaggaagagtt |
334 |
Q |
| |
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||||||||||||||||| |
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| T |
4719 |
agtcttgaggaagagtt |
4703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 334
Target Start/End: Complemental strand, 27412216 - 27411904
Alignment:
| Q |
22 |
ttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttcataaact |
121 |
Q |
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||||||||||| ||| | |||||||||||||| || |||| || |||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
27412216 |
ttcccaaaaactattatgcaagtcatatcagctgtaagtgcagcaaccttggcacttatatcaaccgttgttccatcattggctgcttctcttataaact |
27412117 |
T |
|
| Q |
122 |
tgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgtttcgcca |
221 |
Q |
| |
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|||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27412116 |
tgatcaataggtcaagctcttgttccctcatacttctaaaactgttgatttttgtatggctcaacaattctaatgtgcacatcttgcgcatgtttcgcca |
27412017 |
T |
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| Q |
222 |
ataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagacaagatcatgagtc |
321 |
Q |
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||| ||||||||||||||||| |||||||| |||||||| ||||||||||||| | |||||||| |||||||||||| |||||||||| |||||||||| |
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| T |
27412016 |
atacgaaccgtatacactgaagctcacatccttctgattgtaaaacatgagttgtgctgcctcaataggtggtctacttgcaaagacaatatcatgagtc |
27411917 |
T |
|
| Q |
322 |
ttgaggaagagtt |
334 |
Q |
| |
|
||||||||||||| |
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| T |
27411916 |
ttgaggaagagtt |
27411904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 334
Target Start/End: Original strand, 8466 - 8778
Alignment:
| Q |
22 |
ttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttcataaact |
121 |
Q |
| |
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||||||||||| ||| | |||||||||||| | || |||| || |||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
8466 |
ttcccaaaaactattatgcaagtcatatcaactgtaagtgcagcaaccttggcacttatatcaaccgttgttccatcattggctgcttctcttataaact |
8565 |
T |
|
| Q |
122 |
tgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgtttcgcca |
221 |
Q |
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|||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8566 |
tgatcaataggtcaagctcttgttccctcataattctaaaactgttgatttttgaatggctcaacaattctaatgtgcacatcttgcgcatgtttcgcca |
8665 |
T |
|
| Q |
222 |
ataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagacaagatcatgagtc |
321 |
Q |
| |
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||| ||||||||||||||||| || ||||| ||||||||||||||||||| || | |||||||| |||||||||||| |||||||||| |||||||||| |
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| T |
8666 |
atatgaaccgtatacactgaagctaacatccttctgattataaaacatgaattatactgcctcaataggtggtctacttgcaaagacaaaatcatgagtc |
8765 |
T |
|
| Q |
322 |
ttgaggaagagtt |
334 |
Q |
| |
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||||| ||||||| |
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| T |
8766 |
ttgagaaagagtt |
8778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 38258426 - 38258201
Alignment:
| Q |
22 |
ttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttcataaact |
121 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||| |||||||| |||| | | ||||| |
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| T |
38258426 |
ttccccaaaaccattctacaactcatatcagcagtgagtgtagaaaccttggtgcttaaatcaacctttgttctatcattggtcttttctcttaaaaact |
38258327 |
T |
|
| Q |
122 |
tgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgtttcgcca |
221 |
Q |
| |
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| || ||||||||||| |||||||| |||||| || |||| || ||||||| |||||||||||||||||| |||||||| || | |||||||||||| |
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| T |
38258326 |
ttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatgtttcgcca |
38258227 |
T |
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| Q |
222 |
ataagaaccgtatacactgaaactca |
247 |
Q |
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||||||||| ||| ||| ||||||| |
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| T |
38258226 |
ataagaaccatattcaccaaaactca |
38258201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 334
Target Start/End: Complemental strand, 38262176 - 38261870
Alignment:
| Q |
22 |
ttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttcataaact |
121 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| | |||||||||||| || ||| ||| ||||||| ||||||| ||||| ||| || | |||| |
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| T |
38262176 |
ttccctaaaaccattctacaactcatatcagccgcgagtgtagaaactttagcacttaaatcaacctttgttccgtcattagct------tttagaaaca |
38262083 |
T |
|
| Q |
122 |
tgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgtttcgcca |
221 |
Q |
| |
|
| || ||||||||||| |||||||| |||||| || |||| || ||||||| |||||||||||||||||| |||||||| || | ||| |||||||| |
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|
| T |
38262082 |
ttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatatttcgcca |
38261983 |
T |
|
| Q |
222 |
ataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagacaagatcatgagtc |
321 |
Q |
| |
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||||||||| ||| ||| ||||||| | |||| | || | || | |||| ||||| | |||||||||||| |||||||||||||||||||| |
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| T |
38261982 |
ataagaaccatattcaccaaaactcaagttcctctggtcccaagagattatttttgctgccaaatgaggtggtctacttgcaaagacaagatcatgagtt |
38261883 |
T |
|
| Q |
322 |
ttgaggaagagtt |
334 |
Q |
| |
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|||||||| |||| |
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| T |
38261882 |
ttgaggaaaagtt |
38261870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 38258158 - 38258113
Alignment:
| Q |
289 |
ggtggtctactagcaaagacaagatcatgagtcttgaggaagagtt |
334 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| |||| |
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|
| T |
38258158 |
ggtggtctgcttgcaaagacaagatcatgagtcttgaggaaaagtt |
38258113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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