View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16585_low_17 (Length: 338)
Name: NF16585_low_17
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 2927451 - 2927629
Alignment:
| Q |
11 |
cacagatgctatagcaagattatgaattataattgactttattagcttgtttactactgaaagctatatatatcataactagcaata-gatgaaagcata |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
2927451 |
cacagatgctctagcaagattatgaattatgattgactttattagcttgtttactacggaaagctatat----cataactagcaataagatgaaagcata |
2927546 |
T |
|
| Q |
110 |
acaatacaattagacgataacttaattcctagttaattcacatataagctattgttgaggaatgcattcacaactatctgaca |
192 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2927547 |
acaatacaattagataataacttaattcctagttaattcacatataaattattgttgaggaatgcattcacaactatctgaca |
2927629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 36721420 - 36721364
Alignment:
| Q |
140 |
agttaattcacatataagctattgttgaggaatgcattcacaactatctgacaatcg |
196 |
Q |
| |
|
|||| |||||||||||| || |||||||||| |||||||||||| |||||||||| |
|
|
| T |
36721420 |
agttcattcacatataaactgttgttgaggacaacattcacaactacctgacaatcg |
36721364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 29085756 - 29085840
Alignment:
| Q |
155 |
aagctattgttgaggaatgcattcacaactatctgacaatcgacttcaaaaactacccggttaaggcctaggtcaagagaaattt |
239 |
Q |
| |
|
|||||||| || |||| |||||||||||||| |||| ||| | |||||| |||||||| || ||||| || ||||||| ||||| |
|
|
| T |
29085756 |
aagctattattaaggactgcattcacaactagttgaccatccatttcaaatactacccgattgaggccaagatcaagagcaattt |
29085840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 2902851 - 2902747
Alignment:
| Q |
135 |
ttcctagttaattcacatataagctattgttgaggaatgcattcacaactatctgacaatcgacttcaaaaactacccggttaaggcctaggtcaagaga |
234 |
Q |
| |
|
||||||||| ||||| ||| | ||||| || |||| |||||||||||||| |||||||| |||||| |||||||| || ||||| || ||||||| |
|
|
| T |
2902851 |
ttcctagttcattcatataagatctattattaaggactgcattcacaactagttgacaatcactttcaaatactacccgattcaggccaagttcaagagc |
2902752 |
T |
|
| Q |
235 |
aattt |
239 |
Q |
| |
|
||||| |
|
|
| T |
2902751 |
aattt |
2902747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 27925764 - 27925704
Alignment:
| Q |
135 |
ttcctagttaattcacatataagctattgttgaggaatgcattcacaactatctgacaatc |
195 |
Q |
| |
|
||||||||| ||||||||| ||||||| || |||| || ||||||||||| ||||||||| |
|
|
| T |
27925764 |
ttcctagttcattcacataggagctattattaaggactgaattcacaactagctgacaatc |
27925704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University