View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_low_18 (Length: 335)
Name: NF16585_low_18
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 1536653 - 1536333
Alignment:
| Q |
1 |
tagaataggcttttgtttgaagaaaatttgcagagaccccaaagaggcacatatgtgtatt---ggtattacaagaaattaaaacttcaagaccataagc |
97 |
Q |
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| T |
1536653 |
tagaataggcttttgtttgaagaaaatttgcagagaccccaaagaggcacatatgtgtattattggtactacaagaaattaaaacttcaagaccatacgc |
1536554 |
T |
|
| Q |
98 |
aaaaattacttacccggatgcggtacatacttgccttcaacttccctatgcagaagtttcaaaatttgtaatgtaaacaaaattaaagttcaactaaatt |
197 |
Q |
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| T |
1536553 |
aaaaattacttacccggatgtggtacatacttgccttcaacttccctatgcagaaggctcaaaatttgtaatgtaaacaaaattaaagttcaactaaatt |
1536454 |
T |
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| Q |
198 |
tatagtaagatatgttgattaagaaagagtttattaagtatagtgttgcaagctcaatagatagagcatctattgacactaatgagtttagtgtgtaatc |
297 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1536453 |
tatagtaagatatgttgattaagaacgagtttattaagtatagtgttgcaagctcaatagatagagcatctattgacactaatgagtttagtgtgtaatc |
1536354 |
T |
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| Q |
298 |
tcaatgagtttagtgcatgaa |
318 |
Q |
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| T |
1536353 |
tcaatgagtttagtgcatgaa |
1536333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 1488389 - 1488359
Alignment:
| Q |
163 |
ttgtaatgtaaacaaaattaaagttcaacta |
193 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1488389 |
ttgtaatgtaaacaaaattaaagttcaacta |
1488359 |
T |
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