View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_low_20 (Length: 321)
Name: NF16585_low_20
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 24337156 - 24336871
Alignment:
| Q |
16 |
atgccaggccgccgcctcggtgtctccttagcaacctttggtttcaatggtgtccttattggactccttattgtaaactcagacatttgatcttcacaat |
115 |
Q |
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| T |
24337156 |
atgccaggccgccgcctcggtgtctccttagcaacctttggtttcaatggtgtccttattggactccttattgtaaactcagacatttgatcttcacaat |
24337057 |
T |
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| Q |
116 |
ctgacataactgcagcacttgcagttaccacactccattctatgcttgcctcactcggcgcataacaattcgggctaaggcaacttgaagcagcatctga |
215 |
Q |
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| T |
24337056 |
ctgacataactgcagcacttgcagttaccacactccattctatgcttgcctcactcggcgcgtaacaattcgggctaaggcaacttgaagcagcatctga |
24336957 |
T |
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| Q |
216 |
tgtctgtctattaagaaaattgttcttggagggttttcctttgagactctcaatctcaaataaatctgaacttgcatcacttgcag |
301 |
Q |
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| T |
24336956 |
tgtctgtctagtaagaaaattgttgttggagggttttcctttgagactctcaatctcaaataaatctgaacttgcatcacttgcag |
24336871 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 17744819 - 17744907
Alignment:
| Q |
130 |
gcacttgcagttaccacactccattctatgcttgcctcactcggcgcataacaattcgggctaaggcaacttgaagcagcatctgatgt |
218 |
Q |
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| T |
17744819 |
gcacttgcagttaccacactccattcaatgcttgcttcacttggtgcataaaaatttggactagtgcaaccagaagcaacatgtgatgt |
17744907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 17744954 - 17744986
Alignment:
| Q |
265 |
tcaatctcaaataaatctgaacttgcatcactt |
297 |
Q |
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| T |
17744954 |
tcaatctcaaataaatctgaacttgcatcactt |
17744986 |
T |
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