View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_low_23 (Length: 296)
Name: NF16585_low_23
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 8348139 - 8347872
Alignment:
| Q |
12 |
atgaactagttttctattgacaaaaagccagatagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaacaaaacacaatcaa |
111 |
Q |
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| T |
8348139 |
atgaactagttttctattgacaaaaagccagatagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaccaaaacacaatcaa |
8348040 |
T |
|
| Q |
112 |
actttattacaagaaagttttaacaaaatgtaattcattttatttattacacacccagaataggcattcatcctacccataaccaaactgcacactgcta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
8348039 |
actttattacaagaaagttttaacaaaatgtaattcattttatttcgtacacacccagaataggcattcatcctacccataaccaaacggcacactgata |
8347940 |
T |
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| Q |
212 |
accaaactacattattcaaaaacagcaaaagatgtactcatcttgtacagtaccaataggagatcctg |
279 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
8347939 |
accaaactacattattctaaaacagcaaaagatgtactcatcttgtccggtaccaataggagatcctg |
8347872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 35901510 - 35901244
Alignment:
| Q |
10 |
agatgaactagttttctattgac-aaaaagccagatagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaacaaaacacaat |
108 |
Q |
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|||||||||||||||||| || | ||||| | |||||||||||| |||||||||| | ||| | |||||||||||||||||||||| |||||||||| |
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| T |
35901510 |
agatgaactagttttctactgtccaaaaaacttaatagcatataaacgattacatttccctacagatactaccaaacatgaaagcttaagaaaacacaat |
35901411 |
T |
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| Q |
109 |
caaactttattacaagaaagttttaacaaaatgtaattcattttatttattacacacccagaataggcattcatcctacccataaccaaactgcacactg |
208 |
Q |
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||||||||| | | |||||||| ||||||||| ||||||||||||| |||||| | |||||||||||||||||||||| || |||||| |||||| |
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| T |
35901410 |
taaactttatcaaaggaaagtttcaacaaaatgacattcattttatttggtacacaacaagaataggcattcatcctacccttatccaaacagcacac-- |
35901313 |
T |
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| Q |
209 |
ctaaccaaactacattattcaaaaacagcaaaagatgtactcatcttgtacagtaccaataggagatcctg |
279 |
Q |
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| | | |||||||||||| ||||||||||||||||||||| || || | ||||||||||||||||||| |
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| T |
35901312 |
--atcgacactacattattctaaaacagcaaaagatgtactcgtcccgttcggtaccaataggagatcctg |
35901244 |
T |
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