View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16585_low_25 (Length: 254)

Name: NF16585_low_25
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16585_low_25
NF16585_low_25
[»] chr5 (10 HSPs)
chr5 (66-254)||(694281-694468)
chr5 (66-133)||(33075140-33075207)
chr5 (70-124)||(10437716-10437770)
chr5 (67-124)||(18652841-18652898)
chr5 (66-118)||(29177726-29177778)
chr5 (67-110)||(16602263-16602306)
chr5 (67-118)||(37067625-37067676)
chr5 (66-120)||(28518797-28518851)
chr5 (95-127)||(25941773-25941805)
chr5 (70-126)||(43438334-43438390)
[»] chr8 (14 HSPs)
chr8 (66-124)||(26998676-26998734)
chr8 (66-118)||(24842082-24842134)
chr8 (66-123)||(24017793-24017850)
chr8 (66-118)||(3225855-3225907)
chr8 (66-118)||(10335217-10335269)
chr8 (66-134)||(36916658-36916726)
chr8 (66-124)||(10934678-10934736)
chr8 (66-124)||(33385178-33385236)
chr8 (69-127)||(36058775-36058833)
chr8 (70-118)||(1897871-1897919)
chr8 (66-118)||(7484692-7484744)
chr8 (67-131)||(10815522-10815586)
chr8 (72-124)||(17871844-17871896)
chr8 (70-126)||(44319608-44319664)
[»] chr4 (10 HSPs)
chr4 (66-124)||(12672520-12672578)
chr4 (66-124)||(55936062-55936120)
chr4 (66-118)||(2253967-2254019)
chr4 (67-127)||(32599556-32599616)
chr4 (71-118)||(29922639-29922686)
chr4 (66-124)||(4406248-4406306)
chr4 (66-124)||(52914073-52914131)
chr4 (69-126)||(50686010-50686067)
chr4 (70-118)||(2582821-2582869)
chr4 (72-124)||(18423973-18424025)
[»] chr7 (6 HSPs)
chr7 (66-118)||(21586827-21586879)
chr7 (66-124)||(31115684-31115742)
chr7 (66-124)||(2943219-2943277)
chr7 (66-124)||(25245218-25245276)
chr7 (74-118)||(12088824-12088868)
chr7 (68-124)||(37930775-37930831)
[»] chr3 (14 HSPs)
chr3 (69-124)||(27224587-27224642)
chr3 (66-124)||(24722694-24722752)
chr3 (67-124)||(20625246-20625303)
chr3 (73-118)||(51060745-51060790)
chr3 (66-126)||(40639870-40639930)
chr3 (72-127)||(3020618-3020673)
chr3 (66-124)||(22496958-22497016)
chr3 (66-124)||(37897757-37897815)
chr3 (66-124)||(54595797-54595855)
chr3 (66-123)||(42929081-42929138)
chr3 (67-124)||(48191722-48191779)
chr3 (66-118)||(9492689-9492741)
chr3 (69-117)||(50744980-50745028)
chr3 (70-118)||(51253683-51253731)
[»] chr2 (14 HSPs)
chr2 (69-124)||(3121429-3121484)
chr2 (66-127)||(11093534-11093595)
chr2 (66-127)||(15900294-15900355)
chr2 (66-118)||(6648162-6648214)
chr2 (70-118)||(26003448-26003496)
chr2 (66-124)||(1961384-1961442)
chr2 (66-124)||(21183402-21183460)
chr2 (66-124)||(31024178-31024236)
chr2 (66-124)||(38465796-38465854)
chr2 (66-111)||(17866200-17866245)
chr2 (69-118)||(23378020-23378069)
chr2 (69-118)||(33555255-33555304)
chr2 (69-118)||(38181773-38181822)
chr2 (70-118)||(15916746-15916794)
[»] chr1 (16 HSPs)
chr1 (66-117)||(39362884-39362935)
chr1 (66-124)||(48083511-48083569)
chr1 (66-123)||(14885327-14885384)
chr1 (66-123)||(14885485-14885542)
chr1 (69-133)||(27068778-27068842)
chr1 (66-118)||(33765862-33765914)
chr1 (70-118)||(46494993-46495041)
chr1 (66-117)||(41007691-41007742)
chr1 (66-124)||(34953903-34953961)
chr1 (66-124)||(50308635-50308693)
chr1 (69-118)||(8397003-8397052)
chr1 (66-127)||(29663741-29663801)
chr1 (66-126)||(9902573-9902633)
chr1 (66-126)||(14891743-14891803)
chr1 (66-118)||(44673899-44673951)
chr1 (66-126)||(45115175-45115235)
[»] chr6 (10 HSPs)
chr6 (70-124)||(31996578-31996632)
chr6 (66-118)||(15517165-15517217)
chr6 (69-117)||(34792470-34792518)
chr6 (73-124)||(10258311-10258362)
chr6 (69-124)||(34170085-34170140)
chr6 (72-118)||(11174062-11174108)
chr6 (66-124)||(34379810-34379868)
chr6 (66-126)||(8449579-8449639)
chr6 (66-126)||(8458383-8458443)
chr6 (66-126)||(32254896-32254956)
[»] scaffold0149 (1 HSPs)
scaffold0149 (66-124)||(24681-24739)
[»] scaffold0029 (1 HSPs)
scaffold0029 (70-124)||(15799-15853)
[»] scaffold0009 (1 HSPs)
scaffold0009 (66-124)||(145975-146033)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 66 - 254
Target Start/End: Original strand, 694281 - 694468
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatcaaatggtaggcgtatatgataattgtgatttatttgttt 165  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  694281 gaccacatacataatttattaaataaacctaaaatgttgatttttgtttataagagtgatcaaatggtaggcgtatatgataattgtgatttatttgttt 694380  T
Q  166 aacaatggtgaaactgaaatcgacactagcatggtgaaaagactattttgttttctgcatgttggacaatatccttgtttgatgtgtaa 254  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||    
T  694381 aacaatggtgaaactgaaatcgacactagcatggtg-aaagactattttgttttctgcacgttggacaatgtccttgtttgttgtgtaa 694468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 33075140 - 33075207
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatcaaatggt 133  Q
    |||||||||||| ||||||| ||| ||||||||||||| ||||||| |||||| ||||| || |||||    
T  33075140 gaccacatacatcatttaatgaatgaacctaaaatattaatttttgcttataatagtgaccagatggt 33075207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 10437716 - 10437770
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||||||||||| || ||||||| |||||||||| |||||| |||||    
T  10437716 acatacataatttaataaatgaatctaaaatgttgatttttgcttataatagtga 10437770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 18652841 - 18652898
Alignment:
Q  67 accacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    ||||||||||| ||||||| ||| || ||||||| ||||||||||||||||| |||||    
T  18652841 accacatacatcatttaatgaatgaatctaaaatgttgatttttgtttataatagtga 18652898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 29177778 - 29177726
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||| |||||||  ||||| ||||||||||||||||| |||||||    
T  29177778 gaccacatacatcatttaatgtataaatctaaaatattgatttttctttataa 29177726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 16602263 - 16602306
Alignment:
Q  67 accacatacataatttaataaataaacctaaaatattgattttt 110  Q
    |||||||||||||||| |||||| || |||||||||||||||||    
T  16602263 accacatacataatttcataaatgaatctaaaatattgattttt 16602306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 37067676 - 37067625
Alignment:
Q  67 accacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    ||||||||||| ||||||| ||| || |||||||||| ||||||||||||||    
T  37067676 accacatacatcatttaatgaatgaatctaaaatattaatttttgtttataa 37067625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 28518797 - 28518851
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataaga 120  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| ||||||||    
T  28518797 gaccacatacatcatttaatgaatcaatctaaaattttgatttttgcttataaga 28518851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 25941773 - 25941805
Alignment:
Q  95 taaaatattgatttttgtttataagagtgatca 127  Q
    |||||||||||||||||||||||| ||||||||    
T  25941773 taaaatattgatttttgtttataatagtgatca 25941805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 43438334 - 43438390
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    |||| ||| ||||||| ||| || |||||||||| |||||||||||||| |||||||    
T  43438334 acatgcatcatttaatgaatgaatctaaaatattaatttttgtttataatagtgatc 43438390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 26998734 - 26998676
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    ||||| |||||| ||||||||||||||||||||| ||| |||||||||||||| |||||    
T  26998734 gaccaaatacatcatttaataaataaacctaaaaaattaatttttgtttataatagtga 26998676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 24842082 - 24842134
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||| |||||||    
T  24842082 gaccacatacatcatttaataaataaatctaaaatatcgatttttatttataa 24842134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 24017793 - 24017850
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtg 123  Q
    |||||||||||| ||||||| |||||| ||||||| |||||||||| |||||| ||||    
T  24017793 gaccacatacatcatttaattaataaatctaaaatgttgatttttgcttataatagtg 24017850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 3225855 - 3225907
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||| ||||||| ||| |||| |||||||||||||||| ||||||    
T  3225855 gaccacatacatcatttaatgaatgaaccaaaaatattgatttttgcttataa 3225907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 10335217 - 10335269
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||| || || ||||||||||| || |||||||||||||||||||||||||    
T  10335217 gaccacctatatcatttaataaatgaatctaaaatattgatttttgtttataa 10335269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 36916658 - 36916726
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatcaaatggta 134  Q
    |||||||||||| |||||||||||||| |||||||||  | ||||| |||||| ||||| | |||||||    
T  36916658 gaccacatacattatttaataaataaatctaaaatataaaattttgcttataatagtgaccgaatggta 36916726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 10934678 - 10934736
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  10934678 gaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtga 10934736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 33385236 - 33385178
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| |||||| ||||||| ||||||| || |||||| ||||||| |||||    
T  33385236 gaccacatacatcatttaaaaaataaatctaaaatgttaatttttatttataatagtga 33385178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 36058833 - 36058775
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatca 127  Q
    ||||||| | |||||||||||||| ||||||| || | |||||||||||| ||||||||    
T  36058833 cacatactttatttaataaataaatctaaaatgttaaattttgtttataatagtgatca 36058775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 1897919 - 1897871
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||| ||||||| ||||||  ||||||||||||||||| ||||||    
T  1897919 acatacattatttaatgaataaatataaaatattgatttttgcttataa 1897871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 7484692 - 7484744
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| ||||||    
T  7484692 gaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataa 7484744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 10815522 - 10815586
Alignment:
Q  67 accacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatcaaatg 131  Q
    |||||||||||  |||||| ||| || || ||||||||||||||| |||||| | ||||||||||    
T  10815522 accacatacattttttaattaatgaatctcaaatattgatttttgcttataataatgatcaaatg 10815586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 17871844 - 17871896
Alignment:
Q  72 atacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||| ||||||| ||| ||||||||| ||||||||||| |||||| |||||    
T  17871844 atacatcatttaatgaatgaacctaaaaaattgatttttgcttataatagtga 17871896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 44319608 - 44319664
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    |||||||| ||||||||||| |  |||||||||| ||||||| |||||| |||||||    
T  44319608 acatacatcatttaataaattattctaaaatattaatttttgcttataatagtgatc 44319664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 12672520 - 12672578
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||| ||||||| |||||    
T  12672520 gaccacatacatcatttaatgaataaatctaaaatattgatttttctttataatagtga 12672578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 55936062 - 55936120
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || |||||||||||||||||| |||||| |||||    
T  55936062 gaccacatacatcatttaatgaatgaatctaaaatattgatttttgcttataatagtga 55936120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 2254019 - 2253967
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||| ||||||| |||||| |||||| ||| ||||||||||||||    
T  2254019 gaccacatacatcatttaatgaataaatctaaaaaattaatttttgtttataa 2253967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 32599556 - 32599616
Alignment:
Q  67 accacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatca 127  Q
    ||||||||||| ||||||||||| || |||||||||| ||||||  |||||| ||||||||    
T  32599556 accacatacatcatttaataaatgaatctaaaatattaatttttacttataatagtgatca 32599616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 29922686 - 29922639
Alignment:
Q  71 catacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||| |||||||||| |||||| ||||||||||||||||||| |||||    
T  29922686 cataaataatttaatgaataaatctaaaatattgatttttgtgtataa 29922639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 4406306 - 4406248
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| |||||| ||||||| |||||||||  |||||| |||||    
T  4406306 gaccacatacatcatttaatgaataaatctaaaatgttgatttttacttataatagtga 4406248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 52914073 - 52914131
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || |||||||||| ||||||| |||||| |||||    
T  52914073 gaccacatacatcatttaatgaatgaatctaaaatattaatttttgcttataatagtga 52914131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 50686067 - 50686010
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    ||||||||| ||||||||||| ||  ||||||| | |||||||||||||| |||||||    
T  50686067 cacatacattatttaataaatgaatttaaaatactaatttttgtttataacagtgatc 50686010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 2582869 - 2582821
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||| ||||||| ||| || |||||||||||||||||| ||||||    
T  2582869 acatacatcatttaatgaatcaatctaaaatattgatttttgcttataa 2582821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 18423973 - 18424025
Alignment:
Q  72 atacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||| ||||||| |||||| |||| ||||| |||||||||||||| |||||    
T  18423973 atacatcatttaatgaataaatctaatatatttatttttgtttataatagtga 18424025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 21586879 - 21586827
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||| ||| ||||||| || |||||||||||||||||||||||||    
T  21586879 gaccacatacatcattgaataaatgaatctaaaatattgatttttgtttataa 21586827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 31115684 - 31115742
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||||||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  31115684 gaccacatacataatttaatgaatgaagctaaaatgttgatttttgcttataatagtga 31115742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 2943277 - 2943219
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  2943277 gaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtga 2943219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 25245218 - 25245276
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  25245218 gaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtga 25245276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 12088868 - 12088824
Alignment:
Q  74 acataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||| ||||||||||| || |||||||||||||||||| ||||||    
T  12088868 acatcatttaataaattaatctaaaatattgatttttgcttataa 12088824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 37930775 - 37930831
Alignment:
Q  68 ccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||| |||||  |||| || |||||||||| |||||||||||||| |||||    
T  37930775 ccacatacattatttatcaaatgaatctaaaatattaatttttgtttataatagtga 37930831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 27224642 - 27224587
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    ||||||||| ||||||| |||||| ||||||| ||||||||||||||||| |||||    
T  27224642 cacatacatcatttaatgaataaatctaaaatgttgatttttgtttataatagtga 27224587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 24722752 - 24722694
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||||||| || |||||||||| ||||||| |||||| |||||    
T  24722752 gaccacatacatcatttaataaatgaatctaaaatattaatttttgcttataatagtga 24722694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 20625303 - 20625246
Alignment:
Q  67 accacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    ||||||||||| ||||||||||| ||  |||||| ||||||||||||||||| |||||    
T  20625303 accacatacatcatttaataaatgaatttaaaatgttgatttttgtttataatagtga 20625246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 51060745 - 51060790
Alignment:
Q  73 tacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||    
T  51060745 tacatcatttaataaattaatctaaaatattgatttttgtttataa 51060790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 40639870 - 40639930
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    |||||||||||| ||||||| ||||||  |||||| |||||||||| |||||| |||||||    
T  40639870 gaccacatacatcatttaatgaataaatttaaaatgttgatttttgcttataatagtgatc 40639930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 3020673 - 3020618
Alignment:
Q  72 atacataatttaataaataaacctaaaatattgatttttgtttataagagtgatca 127  Q
    |||||| ||||||||||||||  |||||| ||| ||||||||||||| ||||||||    
T  3020673 atacatcatttaataaataaatataaaatgttggtttttgtttataatagtgatca 3020618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 22497016 - 22496958
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || |||||||||| ||||||| |||||| |||||    
T  22497016 gaccacatacatcatttaatgaatgaatctaaaatattaatttttgcttataatagtga 22496958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 37897757 - 37897815
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||||||||||| ||| ||  |||||| |||||||||| |||||| |||||    
T  37897757 gaccacatacataatttaatgaatgaatttaaaatgttgatttttgcttataatagtga 37897815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 54595855 - 54595797
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  54595855 gaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtga 54595797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 42929081 - 42929138
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtg 123  Q
    |||||||| ||| ||||| ||||| || ||||||| ||||||||||||||||| ||||    
T  42929081 gaccacatgcatcatttactaaattaatctaaaatgttgatttttgtttataatagtg 42929138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 48191779 - 48191722
Alignment:
Q  67 accacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    ||||||||||| ||||||| ||| || ||||||| || |||||||||||||| |||||    
T  48191779 accacatacatcatttaatgaatgaatctaaaatgttaatttttgtttataatagtga 48191722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 9492741 - 9492689
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||||||| | |||||||| ||||||| |  ||||||||||||||    
T  9492741 gaccacatacataattaattaaataaatctaaaatgtaaatttttgtttataa 9492689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 50745028 - 50744980
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttata 117  Q
    ||||||||| |||||||||||||| ||||||| |||| ||||| |||||    
T  50745028 cacatacatcatttaataaataaatctaaaatgttgacttttgcttata 50744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 51253731 - 51253683
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||| |||||||||||  |  ||||||||||||||||||||||||    
T  51253731 acatacatcatttaataaatggatttaaaatattgatttttgtttataa 51253683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 3121484 - 3121429
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    ||||||||| ||||||||||| || |||||||||||||||||| |||||| |||||    
T  3121484 cacatacattatttaataaatgaatctaaaatattgatttttgcttataatagtga 3121429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 11093595 - 11093534
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatca 127  Q
    |||||||||||| ||||||| ||| || |||||||||||||||||  |||||| ||||||||    
T  11093595 gaccacatacatcatttaatgaatcaatctaaaatattgatttttacttataatagtgatca 11093534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 15900294 - 15900355
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatca 127  Q
    |||||||||||| ||||| ||||||||  ||||||||| |||||| ||||||| ||||||||    
T  15900294 gaccacatacatcatttattaaataaatgtaaaatattaatttttatttataatagtgatca 15900355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 6648162 - 6648214
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||| ||| ||||||| ||| ||| ||||||||||||||||||||||||    
T  6648162 gaccacatgcatcatttaatgaatgaacataaaatattgatttttgtttataa 6648214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 26003496 - 26003448
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||| ||||||| ||| ||||||||||||||||||||| ||||||    
T  26003496 acatacatcatttaatgaatgaacctaaaatattgatttttgcttataa 26003448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 1961384 - 1961442
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  1961384 gaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtga 1961442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 21183402 - 21183460
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  21183402 gaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataacagtga 21183460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 31024236 - 31024178
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  31024236 gaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtga 31024178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 38465854 - 38465796
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  38465854 gaccacatacatcatttaatgaattaatctaaaatgttgatttttgcttataatagtga 38465796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 17866245 - 17866200
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttg 111  Q
    |||||||||||| ||||| ||||| ||||||||| |||||||||||    
T  17866245 gaccacatacatcatttattaaatgaacctaaaacattgatttttg 17866200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 23378020 - 23378069
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    ||||||||| ||||||||||| || |||||||||| ||||||| ||||||    
T  23378020 cacatacatcatttaataaatgaatctaaaatattaatttttgcttataa 23378069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 33555255 - 33555304
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    ||||||||| |||| || |||||| ||||||| |||||||||||||||||    
T  33555255 cacatacatcattttatgaataaatctaaaatgttgatttttgtttataa 33555304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 38181822 - 38181773
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    ||||||||| ||||||| ||| || |||||||||||||||||| ||||||    
T  38181822 cacatacatcatttaatgaatgaatctaaaatattgatttttgcttataa 38181773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 15916794 - 15916746
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||| ||||||| ||| || |||||||||||||||||| ||||||    
T  15916794 acatacattatttaatgaatgaatctaaaatattgatttttgcttataa 15916746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 39362884 - 39362935
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttata 117  Q
    |||||||||| | ||||||||||| || ||||||||||||||||||||||||    
T  39362884 gaccacatacttcatttaataaatgaatctaaaatattgatttttgtttata 39362935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 48083569 - 48083511
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| ||||||||||||| ||||||| |||||| |||||    
T  48083569 gaccacatacatcatttaatgaatgaacctaaaatattaatttttgcttataatagtga 48083511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 14885384 - 14885327
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtg 123  Q
    |||||||||||||||||||| ||||||  |||||| ||||||||| ||||||| ||||    
T  14885384 gaccacatacataatttaatgaataaatttaaaatgttgatttttttttataatagtg 14885327  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 14885542 - 14885485
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtg 123  Q
    |||||||||||||||||||| ||||||  |||||| ||||||||| ||||||| ||||    
T  14885542 gaccacatacataatttaatgaataaatttaaaatgttgatttttttttataatagtg 14885485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 27068842 - 27068778
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatcaaatggt 133  Q
    |||| |||| |||||||||||||| ||||||| |||||||||  |||||| |||||||| |||||    
T  27068842 cacaaacattatttaataaataaatctaaaatgttgatttttacttataatagtgatcatatggt 27068778  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 33765862 - 33765914
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||| ||||||||||| || ||||||| |||||||||| ||||||    
T  33765862 gaccacatacatcatttaataaatgaatctaaaatgttgatttttgcttataa 33765914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 46495041 - 46494993
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||| |||||||||||||| ||||||| |||||||||| ||||||    
T  46495041 acatacatcatttaataaataaatctaaaatgttgatttttgattataa 46494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 41007742 - 41007691
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttata 117  Q
    |||||||||||| ||||||| ||||||  ||||||||||||||||| |||||    
T  41007742 gaccacatacatcatttaatgaataaatttaaaatattgatttttgcttata 41007691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 34953961 - 34953903
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| ||  ||||||||||||||||| |||||| |||||    
T  34953961 gaccacatacatcatttaatgaatgaatttaaaatattgatttttgcttataatagtga 34953903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 50308693 - 50308635
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    ||||| |||||||||||||| |||||| ||||||  |||||||||| |||||| |||||    
T  50308693 gaccaaatacataatttaatgaataaatctaaaaagttgatttttgcttataatagtga 50308635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 8397052 - 8397003
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||| || ||||||||||||||  |||||||||||||| |||||||||    
T  8397052 cacatatatcatttaataaataaatttaaaatattgatttctgtttataa 8397003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 29663741 - 29663801
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatca 127  Q
    ||||||||| || ||||||| ||| || ||||| ||||||||||||||||||| ||||||||    
T  29663741 gaccacatatatcatttaatgaatgaatctaaa-tattgatttttgtttataacagtgatca 29663801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 9902633 - 9902573
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    |||||||||||| ||||||||||| |||||||||  || ||||||  |||||| |||||||    
T  9902633 gaccacatacatcatttaataaattaacctaaaaagttaatttttacttataacagtgatc 9902573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 14891803 - 14891743
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    ||||| |||||| ||||||| ||| | | |||||||||||||||| ||||||| |||||||    
T  14891803 gaccatatacatcatttaatgaatgatcttaaaatattgatttttctttataatagtgatc 14891743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 44673951 - 44673899
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    ||||||||| || ||||| ||||||||||||||| ||  ||||||||||||||    
T  44673951 gaccacatatatcatttattaaataaacctaaaaaataaatttttgtttataa 44673899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 45115235 - 45115175
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    ||||||||| || ||| ||| |||||||||||||||| |||||||| |||||  |||||||    
T  45115235 gaccacatatatcattaaatgaataaacctaaaatatagatttttgcttatattagtgatc 45115175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 31996578 - 31996632
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||| ||||||||||| |||||||||| |||||||||| |||||| |||||    
T  31996578 acatacatcatttaataaatgaacctaaaatgttgatttttgcttataatagtga 31996632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 15517165 - 15517217
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||| ||||||| ||| || |||||||||||||||||| ||||||    
T  15517165 gaccacatacatcatttaatgaatgaatctaaaatattgatttttgcttataa 15517217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 34792518 - 34792470
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttata 117  Q
    ||||| ||||||||||| ||| || ||||||||||||||||||||||||    
T  34792518 cacatgcataatttaatgaatgaatctaaaatattgatttttgtttata 34792470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 10258362 - 10258311
Alignment:
Q  73 tacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    ||||| ||||||||||| || ||||||| ||||||||||||||||| |||||    
T  10258362 tacatcatttaataaatgaatctaaaatgttgatttttgtttataacagtga 10258311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 34170140 - 34170085
Alignment:
Q  69 cacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    ||||||||| ||||||| ||| || ||||||| ||||||||||||||||| |||||    
T  34170140 cacatacatcatttaatgaatgaatctaaaatgttgatttttgtttataatagtga 34170085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 11174108 - 11174062
Alignment:
Q  72 atacataatttaataaataaacctaaaatattgatttttgtttataa 118  Q
    |||||||||||||||||| || |||||| |||||||||| |||||||    
T  11174108 atacataatttaataaatgaatctaaaaaattgatttttatttataa 11174062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 34379810 - 34379868
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || ||||||| |||||||||| |||||| |||||    
T  34379810 gaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtga 34379868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 8449639 - 8449579
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    |||||||||||| ||||| | |||||| | |||||||| ||||||| |||||| |||||||    
T  8449639 gaccacatacatcatttattgaataaatccaaaatattaatttttgcttataatagtgatc 8449579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 8458443 - 8458383
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    |||||||||||| ||||| | |||||| | |||||||| ||||||| |||||| |||||||    
T  8458443 gaccacatacatcatttattgaataaatccaaaatattaatttttgcttataatagtgatc 8458383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 32254896 - 32254956
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtgatc 126  Q
    |||||||||||| ||||||| ||| || |||||||||| | ||||| |||||| |||||||    
T  32254896 gaccacatacatcatttaatgaatgaatctaaaatattaacttttgcttataatagtgatc 32254956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 24681 - 24739
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || |||||||||| ||||||| |||||| |||||    
T  24681 gaccacatacatcatttaatgaatgaatctaaaatattaatttttgcttataatagtga 24739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 15853 - 15799
Alignment:
Q  70 acatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||| |||| |||||| |||||||||||||||| ||| ||||||| |||||    
T  15853 acatacatcatttgataaatgaacctaaaatattgatgtttatttataatagtga 15799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 146033 - 145975
Alignment:
Q  66 gaccacatacataatttaataaataaacctaaaatattgatttttgtttataagagtga 124  Q
    |||||||||||| ||||||| ||| || |||||||  |||||||||||||||| |||||    
T  146033 gaccacatacatcatttaatgaatgaatctaaaatgatgatttttgtttataatagtga 145975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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