View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_low_32 (Length: 204)
Name: NF16585_low_32
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 51994922 - 51994753
Alignment:
| Q |
18 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaa |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
51994922 |
ggtaaatttcaagaaccagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttccattacatgtttacatttataagaaaaatgcaa |
51994823 |
T |
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| Q |
118 |
tccactttcatattactttgccccaattatggattaatatgccacaaattgcaactgatatccaattgtc |
187 |
Q |
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|| |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
51994822 |
tcaactttcatattactttaccccaattattgattaatatgccacaaattgcagctgatatccaattgtc |
51994753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 7841591 - 7841421
Alignment:
| Q |
18 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
7841591 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaggaccattattccttgtcttccattacatgtttacatttataagaaaaatgcaa |
7841492 |
T |
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| Q |
118 |
tccactttcatattactttgccccaattatggattaatatgccacaaa-ttgcaactgatatccaattgtc |
187 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |
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| T |
7841491 |
tcaactttcatattactttgccccaattattgattaatatgccacaaatttgcagctgatatccaattgtc |
7841421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 27076833 - 27077002
Alignment:
| Q |
18 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaa |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
27076833 |
ggtaaatttcaagaactggtaaaatataaaattgataaacaaggcaagaccattattccttgtcttccattacatgtttacatttataagaaaaatgcaa |
27076932 |
T |
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| Q |
118 |
tccactttcatattactttgccccaattatggattaatatgccacaaattgcaactgatatccaattgtc |
187 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||| |
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| T |
27076933 |
tcaactttcatattactttgccccaattattgattaatatgccacaaattgcagcggatatcgaattgtc |
27077002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 50447153 - 50446983
Alignment:
| Q |
18 |
ggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaa |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
50447153 |
ggtaaatttcgggaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttctattacatgtttacatttataagaaaattgcaa |
50447054 |
T |
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| Q |
118 |
tccactttcatattactttgccccaattatggattaatatgccacaaa-ttgcaactgatatccaattgtc |
187 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||||| |
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| T |
50447053 |
tcaactttcatattactttgccccaattattgattaatatgccataaatttgcagctgatatccaattgtc |
50446983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 31491683 - 31491512
Alignment:
| Q |
18 |
ggtaaatttcaagaactagtaaaa-tataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgca |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||| |||| ||| |||||||||||||| |
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| T |
31491683 |
ggtaaatttcaagaactagtaaaaatataaaattgataaacaaggcaagaccattattctcggtcattcattacatatttacattcataagaaaaatgca |
31491584 |
T |
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| Q |
117 |
atccactttcatattactttgccccaattatggattaatatgccacaaa-ttgcaactgatatccaattgtc |
187 |
Q |
| |
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||||| | |||||||||||| |||||||| | ||||||||||||||||| ||||| || ||||| ||||||| |
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| T |
31491583 |
atccagtatcatattactttcccccaattgttgattaatatgccacaaatttgcagcttatatcaaattgtc |
31491512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 17169001 - 17169085
Alignment:
| Q |
103 |
ataagaaaaatgcaatccactttcatattactttgccccaattatggattaatatgccacaaatt-gcaactgatatccaattgtc |
187 |
Q |
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| T |
17169001 |
ataagaaaaatgcaattcaattccatattacttc-ccccaattgttgtttaatatgccacaaatttgcaactgatatccaattgtc |
17169085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 17168912 - 17168967
Alignment:
| Q |
19 |
gtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattatt |
74 |
Q |
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|||||||| ||||||||| |||||||||||| || | ||||||||||||||||||| |
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| T |
17168912 |
gtaaattttaagaactagcaaaatataaaatcgagacacaaggcaagaccattatt |
17168967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 24534888 - 24534805
Alignment:
| Q |
103 |
ataagaaaaatgcaatccactttcatattactttgccccaattatggattaatatgccacaaa-ttgcaactgatatccaattgtc |
187 |
Q |
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||||||||||||||||| | ||||||||||| | |||| ||| | | ||||||||||||||| || ||||||||||||||||||| |
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| T |
24534888 |
ataagaaaaatgcaatctaatttcatattac--tccccctattgttgtttaatatgccacaaatttacaactgatatccaattgtc |
24534805 |
T |
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