View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16585_low_6 (Length: 470)

Name: NF16585_low_6
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16585_low_6
NF16585_low_6
[»] scaffold0170 (2 HSPs)
scaffold0170 (62-461)||(7975-8395)
scaffold0170 (1-34)||(7914-7947)
[»] chr8 (3 HSPs)
chr8 (66-451)||(25130628-25131033)
chr8 (80-155)||(9670680-9670751)
chr8 (80-155)||(39531507-39531586)
[»] chr1 (10 HSPs)
chr1 (190-451)||(13569395-13569656)
chr1 (147-403)||(18542373-18542630)
chr1 (66-320)||(10801921-10802193)
chr1 (67-155)||(13569678-13569766)
chr1 (311-451)||(10800793-10800925)
chr1 (97-182)||(41752151-41752243)
chr1 (116-155)||(18542643-18542682)
chr1 (80-144)||(44586413-44586473)
chr1 (147-204)||(44586332-44586389)
chr1 (3-34)||(13569807-13569838)
[»] chr4 (3 HSPs)
chr4 (167-451)||(43301138-43301411)
chr4 (147-201)||(43301685-43301739)
chr4 (103-155)||(43301752-43301804)
[»] scaffold0001 (2 HSPs)
scaffold0001 (66-338)||(141647-141941)
scaffold0001 (333-451)||(142251-142368)
[»] chr6 (3 HSPs)
chr6 (329-451)||(24500633-24500754)
chr6 (147-201)||(20623869-20623923)
chr6 (103-155)||(20623804-20623856)
[»] chr3 (3 HSPs)
chr3 (91-155)||(43585446-43585510)
chr3 (80-155)||(31986142-31986217)
chr3 (91-148)||(53707490-53707547)
[»] chr5 (1 HSPs)
chr5 (95-152)||(22541394-22541451)


Alignment Details
Target: scaffold0170 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 62 - 461
Target Start/End: Original strand, 7975 - 8395
Alignment:
Q  62 gttgctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatcc------------- 148  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  7975 gttgctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattttgattt 8074  T
Q  149 --------ctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattctatgttgtataagttgatcaagt 240  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8075 ctcaatccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattctatgttgtataagttgatcaagt 8174  T
Q  241 ccaatgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatact 340  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  8175 ccaatgtaataacttgaataatgagaaggtaaggatttcttaggattattacttcaagaggctcaaattttcctaaatagcttaaaacaagttaaatact 8274  T
Q  341 ttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttgggcgcctgtt 440  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8275 ttcatggatgtgtgaataaattagaaactttgctcattgtttgatatatcaatatagcataattgttataaccactttgtagtatttttgggcgcctgtt 8374  T
Q  441 ggtgtgtttgtttggtctgtg 461  Q
    ||||||||||||||| |||||    
T  8375 ggtgtgtttgtttggcctgtg 8395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7914 - 7947
Alignment:
Q  1 tcctcctcttcactttctccaggtttgttccatg 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  7914 tcctcctcttcacttcctccaggtttgttccatg 7947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 66 - 451
Target Start/End: Complemental strand, 25131033 - 25130628
Alignment:
Q  66 ctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt---------- 155  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||              
T  25131033 ctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatccctaattttgattttcca 25130934  T
Q  156 -----------agaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtcca 243  Q
               ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25130933 aatcctaatttagaattgttaattattctctttgtttgtccaaagagaattgttaatttcagaattttgattctactgttgtataagttgatcaagtcca 25130834  T
Q  244 atgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttc 343  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  25130833 atgtaataacttgaataacgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagtctaaaacaagttaaatactttc 25130734  T
Q  344 atggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttgggcgcctgttggt 443  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  25130733 atgaatgtgtgaataaattagaaactttgctgattgtttgatatagcaatatagcataattgttataaccactatgtagtatttttgg--gcctgttggt 25130636  T
Q  444 gtgtttgt 451  Q
    ||||||||    
T  25130635 gtgtttgt 25130628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 9670751 - 9670680
Alignment:
Q  80 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 155  Q
    |||||||||||||    ||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||    
T  9670751 ttgttaatgggtg----aatgagttgattattcaaattccaaaccgcaatttagaattgttgataatccctaattt 9670680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 39531507 - 39531586
Alignment:
Q  80 ttgttaatgggtgaatcaa-----tgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 155  Q
    |||||||||||||||||||     ||||||||||||| |||||| ||||| |||||||  |||||||||||| || |||||    
T  39531507 ttgttaatgggtgaatcaaggagttgagttgattattcaaattcaaaactacaattta-gattgttgattattcccaattt 39531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 190 - 451
Target Start/End: Complemental strand, 13569656 - 13569395
Alignment:
Q  190 agaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtccaatgtaataacttgaataatgagaatgtaaggatttcttaggatta 288  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  13569656 agaattgttaatttcagaattttgattctactgttgtataagttgatcaagtccaatgtaataacttggataacgagaatgtaaggatttcttaggatta 13569557  T
Q  289 ttacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatata 388  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13569556 ttacttcaagaggctcaaattttggtaaatagtctaaaacaagttaaatactttcatgaatgtgtgaataaattagaaactttgctgattgtttgatata 13569457  T
Q  389 gcaatatagcataattgttataaccactttgtagtatttttgggcgcctgttggtgtgtttgt 451  Q
    ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  13569456 gcaatatagcataattgttataaccactttgtagtattttttgg-gcatgttggtgtgtttgt 13569395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 147 - 403
Target Start/End: Complemental strand, 18542630 - 18542373
Alignment:
Q  147 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtccaat 245  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  18542630 ccctaatttagaattgttgattcttctctttgtttatccaaagagaattgttaatttcagaattttgattctaatgctgtataagttgatcaagtccaat 18542531  T
Q  246 gtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttcat 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||    
T  18542530 gtaataacttgaataatgagaatgtaaggatttcttaggattattacttcagaaggctcaaattttggtaaatagtctaaaacaagttaaatactttcat 18542431  T
Q  346 ggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataat 403  Q
    | |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  18542430 gaatgtgtgaataaattagaaactttgttgattgtttgatataacaatatagcataat 18542373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 66 - 320
Target Start/End: Complemental strand, 10802193 - 10801921
Alignment:
Q  66 ctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt---------- 155  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||              
T  10802193 ctgaatgttgatgcttgttaaggagtgaatcaatgagttgattatttaaattcaaaactgcaatttataattattgattatccctaattttgatttccca 10802094  T
Q  156 -----------agaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtcca 243  Q
               ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10802093 aaccctaatttagaattgttaattcttctctttctttgtccaaagagaattgttaatttcagaattttgattctactgttgtataagttgatcaagtcca 10801994  T
Q  244 atgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatag 320  Q
    |||||||||||||||    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10801993 atgtaataacttgaa----gagaatgtaaggatttcttaggatttttacttcaagaggctcaaattttggtaaatag 10801921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 13569766 - 13569678
Alignment:
Q  67 tgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 155  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13569766 tgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatccctaattt 13569678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 311 - 451
Target Start/End: Complemental strand, 10800925 - 10800793
Alignment:
Q  311 tggtaaatagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttata 410  Q
    ||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||        |||||||||||||||    
T  10800925 tggtaaatagtctaaaacaagttaaatactttcatgaatgtgtgaataaattagaaacgttgctgattgtttgatat--------agcataattgttata 10800834  T
Q  411 accactttgtagtatttttgggcgcctgttggtgtgtttgt 451  Q
    |||| ||||||||||||||  | ||||||||||||||||||    
T  10800833 accaatttgtagtatttttttgggcctgttggtgtgtttgt 10800793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 41752151 - 41752243
Alignment:
Q  97 aatgagttgattatttaaattccaaactgcaatttataattgttgattat-------ccctaatttagaattgttgattcttctctttgtttg 182  Q
    ||||||||||||||| |||||| |||| |||||||| ||||||| |||||       |||||||| | |||||||||||||||||||||||||    
T  41752151 aatgagttgattattcaaattctaaaccgcaatttagaattgttaattatccccaaaccctaattcataattgttgattcttctctttgtttg 41752243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 18542682 - 18542643
Alignment:
Q  116 ttccaaactgcaatttataattgttgattatccctaattt 155  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  18542682 ttccaaagtgcaatttataattgttgattatccctaattt 18542643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 44586473 - 44586413
Alignment:
Q  80 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgatt 144  Q
    |||||||||||||    ||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  44586473 ttgttaatgggtg----aatgagttgattattcaaattccaaaccgcaatttagaattgttgatt 44586413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 44586389 - 44586332
Alignment:
Q  147 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttc 204  Q
    |||||||| |||||||| |||||||||| ||||||||||| ||||||| ||| |||||    
T  44586389 ccctaattcagaattgtcgattcttctccttgtttgtccagagagaatcgttgatttc 44586332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 13569838 - 13569807
Alignment:
Q  3 ctcctcttcactttctccaggtttgttccatg 34  Q
    ||||||||||||||||||||||||||||||||    
T  13569838 ctcctcttcactttctccaggtttgttccatg 13569807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 167 - 451
Target Start/End: Complemental strand, 43301411 - 43301138
Alignment:
Q  167 ttcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtccaatgtaataacttgaataatgag 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        
T  43301411 ttcttctctttgtttgtccaaagagaattgttaatttcagaattttgattctactgttgtataagttgatcaagtccaatgtaataacttgaataa---- 43301316  T
Q  266 aatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaatactttcatggatgtgtgaataaattaaa 365  Q
           |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||| |||||||||||||||| |    
T  43301315 -------ggatttcttaggattattacttcaagaggctcaaattttggtaaatggtctaaaacaagttaaatactttcatgaatgtgtgaataaattaga 43301223  T
Q  366 aactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttgggcgcctgttggtgtgtttgt 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  43301222 aactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtattttttgg-gcctgttggtgtgtttgt 43301138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 43301739 - 43301685
Alignment:
Q  147 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43301739 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 43301685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 43301804 - 43301752
Alignment:
Q  103 ttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 155  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  43301804 ttgattatttaaatacaaaactgcaatttataattgttgattatccctaattt 43301752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 66 - 338
Target Start/End: Original strand, 141647 - 141941
Alignment:
Q  66 ctgaacgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatcc----------------- 148  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||                      
T  141647 ctgaatgttgatgcttgttaatgggtgaatcaatgagttgattatttaaattcaaaactgcaatttataattgttgattatctttaattttgatttccca 141746  T
Q  149 ----ctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaatttcagaattttgattcta-tgttgtataagttgatcaagtcca 243  Q
        ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||| ||||    
T  141747 aactctaatttagaattgttgattcttctctttgtttgtccaaagagaatttttaatttcagaattttgattctactattgcataagttgatcaactcca 141846  T
Q  244 atgtaataacttgaataatgagaatgtaaggatttcttaggattattacttcaagaggctcaaattttggtaaatagcttaaaacaagttaaata 338  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  141847 atgtaataacttgaataacgagaatataaggatttcttaggattattacttcaagaggctcaaattttggtaaatagtttaaaacaagttaaata 141941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 333 - 451
Target Start/End: Original strand, 142251 - 142368
Alignment:
Q  333 taaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttttggg 432  Q
    |||||| ||||||| | |||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||    
T  142251 taaatattttcatgaacgtgtgaataaattagaaactttgctgattgtttaatattgcattatagcataattgttataaccactttgtagtattttttgg 142350  T
Q  433 cgcctgttggtgtgtttgt 451  Q
     ||||||||||||||||||    
T  142351 -gcctgttggtgtgtttgt 142368  T

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Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 329 - 451
Target Start/End: Complemental strand, 24500754 - 24500633
Alignment:
Q  329 aagttaaatactttcatggatgtgtgaataaattaaaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttt 428  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24500754 aagttaaatactttcatgaatgtgtcaataaattagaaactttgctgattgtttgatatagcaatatagcataattgttataaccactttgtagtatttt 24500655  T
Q  429 tgggcgcctgttggtgtgtttgt 451  Q
    | || ||||||||||||||||||    
T  24500654 ttgg-gcctgttggtgtgtttgt 24500633  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 20623869 - 20623923
Alignment:
Q  147 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20623869 ccctaatttagaattgttgattcttctctttgtttgtccaaagagaattgttaat 20623923  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 20623804 - 20623856
Alignment:
Q  103 ttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 155  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  20623804 ttgattatttaaatacaaaactgcaatttataattgttgattatccctaattt 20623856  T

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Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 43585446 - 43585510
Alignment:
Q  91 tgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 155  Q
    ||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||    
T  43585446 tgaatcaatgagttgattattcaaattccaaaccacaatttagaattgttgattatccctaattt 43585510  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 31986142 - 31986217
Alignment:
Q  80 ttgttaatgggtgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaattt 155  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||| |||||    
T  31986142 ttgttaatggatgaatcaatgagttgattattcaaatttcaaaccacaatttagaattgttgattatccccaattt 31986217  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 53707490 - 53707547
Alignment:
Q  91 tgaatcaatgagttgattatttaaattccaaactgcaatttataattgttgattatcc 148  Q
    ||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||    
T  53707490 tgaatcaatgagttgattattcaaatttcaaaccacaatttagaattgttgattatcc 53707547  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 22541394 - 22541451
Alignment:
Q  95 tcaatgagttgattatttaaattccaaactgcaatttataattgttgattatccctaa 152  Q
    ||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||    
T  22541394 tcaatgagttgattattcaaattccaaaccacaatttagaattgttgattatccctaa 22541451  T

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