View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16585_low_7 (Length: 469)
Name: NF16585_low_7
Description: NF16585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16585_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 51 - 454
Target Start/End: Original strand, 28082600 - 28083006
Alignment:
| Q |
51 |
ttttccttgacacaaagtaacccaatttagatgtgtagtgtataaggctcttcccatatatatatgtgtccattgaaacccaaccaatggaatggatatc |
150 |
Q |
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| T |
28082600 |
ttttccttgacacaaagtaacccaatttagatgtgtagtgtataaggctcttcccatatatatatgtgtcaattgaaacccaaccaatggaatccatg-- |
28082697 |
T |
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| Q |
151 |
caccaatttgaatatgttaaggaattttcacatcttcaactcaaaagataaaaagatgccgagacatttgatatgttgaagtaaagacttgaatttacaa |
250 |
Q |
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| T |
28082698 |
caccaatttgaatatgttaaggaattttcacatcttcaactctaaagataaaaagatgccaagatatttgatatgttgaagtaaagacttgaatttacaa |
28082797 |
T |
|
| Q |
251 |
gtcttaacttctcagcatctagtgtgtataaattttgtggctaaactctttgtataaaaaagaaacagatcaccagtacaaaaggagtggcttttaacat |
350 |
Q |
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| T |
28082798 |
gtcttaacttctcagcatctagtgtgtataaattttgtggctaaactctttgtataaaaaagaaacagatcaccagtacaaagggagtggcttttaacat |
28082897 |
T |
|
| Q |
351 |
ggaggaatgctaaatgtctcaatcatataccaataatgcagctatc-----agcataatttgacaataaagatggaaagtggatatgaggaaggaatagc |
445 |
Q |
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| T |
28082898 |
ggaggaatgttaaatgtctcaatcatataccaataatgcagctatcagcatagcataatttgacaataaagatggaaagtggatatgaggaaggaatagc |
28082997 |
T |
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| Q |
446 |
aacatactt |
454 |
Q |
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| T |
28082998 |
aacatactt |
28083006 |
T |
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