View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16586_high_5 (Length: 298)
Name: NF16586_high_5
Description: NF16586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16586_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 34694734 - 34694916
Alignment:
| Q |
1 |
tgttgaggtttcacctacctatgcatcttcatatcaattataaacttccaaaatttcacaaggcaaagctaattagtttgatcaaagtgtatgtttttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694734 |
tgttgaggtttcacctacctatgcatcttcatatcaattataaacttccaaaatttcacaaggcaaagctaattagtttgatcaaagtgtatgtttttgt |
34694833 |
T |
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| Q |
101 |
tcagaacaaacctcatctcgtcttattattatgtccttttcgtttgtgacatcactacctcaaaacaattcctctcccaattc |
183 |
Q |
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| T |
34694834 |
tcagaacaaacctcatctcgtcttattattatgtccttttggtttgggacatcactacctcaaaacaattcctctcccaattc |
34694916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 34825557 - 34825512
Alignment:
| Q |
150 |
catcactacctcaaaacaattcctctcccaattcctatctaacatc |
195 |
Q |
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||||||| |||||||||||||| ||||||||| | ||||||||||| |
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| T |
34825557 |
catcacttcctcaaaacaattcttctcccaatccttatctaacatc |
34825512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 3903245 - 3903183
Alignment:
| Q |
223 |
tccatctcctttaacgcaacaaagatcatctcaattactgaaacataatcacctttgctattc |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3903245 |
tccatctcctttaacgcaacaaagatcatctcaattacggaaacataatcacctttgctattc |
3903183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 24719481 - 24719543
Alignment:
| Q |
223 |
tccatctcctttaacgcaacaaagatcatctcaattactgaaacataatcacctttgctattc |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24719481 |
tccatctcctttaacgcaacaaagatcatctcaattaccgaaacataatcacctttgctattc |
24719543 |
T |
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