View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16586_high_9 (Length: 241)
Name: NF16586_high_9
Description: NF16586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16586_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 11217425 - 11217210
Alignment:
| Q |
22 |
ataaattcctacactcctctacgaactccgactcccacacccaaagtttccttctccacttccaagcctcccc-----------aacctcaggcaaacat |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11217425 |
ataaattcctacactcctctacaaactccgactcccgcacccaaagtttccttctccacttccaagcctcccctccctcaccccaacctcaggcaaacat |
11217326 |
T |
|
| Q |
111 |
atgtgccacagttgatgatttatttgatatataacgttaaaaacgtctactgcacttttatttggccacggggggatcgttaccacaaaagtgcaacaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11217325 |
atgtgccacagttgatgatttatttgatatataacgttaaaaacgtctactgcacttttatttggccacggggggatcgttaccacaaaagtgcaacaat |
11217226 |
T |
|
| Q |
211 |
tagcatgggtaaaatt |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11217225 |
tagcatgggtaaaatt |
11217210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 20366780 - 20366852
Alignment:
| Q |
22 |
ataaattcctacactcctctacgaactccgactcccacacccaaagtttccttctccacttccaagcctcccc |
94 |
Q |
| |
|
||||||||||||||| |||||| |||| | ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20366780 |
ataaattcctacacttctctaccaactgcaactcccacacccaaagtctccttctccacttccaagcctcccc |
20366852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 7957363 - 7957291
Alignment:
| Q |
22 |
ataaattcctacactcctctacgaactccgactcccacacccaaagtttccttctccacttccaagcctcccc |
94 |
Q |
| |
|
|||||||||||||||||||||| | | | ||| ||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
7957363 |
ataaattcctacactcctctaccacccctagctcacacgcccaatgtctccttctccacttccaagcctcccc |
7957291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 7320164 - 7320092
Alignment:
| Q |
22 |
ataaattcctacactcctctacgaactccgactcccacacccaaagtttccttctccacttccaagcctcccc |
94 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
7320164 |
ataaattcatacactcctctaccaactccaactcccacaccgaaagtctccttctccgcttccaaacctcccc |
7320092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 27544517 - 27544445
Alignment:
| Q |
22 |
ataaattcctacactcctctacgaactccgactcccacacccaaagtttccttctccacttccaagcctcccc |
94 |
Q |
| |
|
||||||||||||||||| |||| | ||| ||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27544517 |
ataaattcctacactccactaccatttcctcctcccacgcccatagtctccttctccacttccaagcctcccc |
27544445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 32991382 - 32991314
Alignment:
| Q |
26 |
attcctacactcctctacgaactccgactcccacacccaaagtttccttctccacttccaagcctcccc |
94 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||| | | ||||| |||||||||||||||||| |
|
|
| T |
32991382 |
attcctacactcctctaccaacgcctcctcccacacccacaatccccttcgccacttccaagcctcccc |
32991314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University