View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16586_low_1 (Length: 723)

Name: NF16586_low_1
Description: NF16586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16586_low_1
NF16586_low_1
[»] chr2 (3 HSPs)
chr2 (58-392)||(36682447-36682782)
chr2 (384-708)||(36680770-36681093)
chr2 (509-548)||(6632409-6632448)
[»] chr5 (3 HSPs)
chr5 (58-296)||(36830118-36830356)
chr5 (449-548)||(18904781-18904877)
chr5 (363-546)||(12470240-12470421)
[»] chr4 (2 HSPs)
chr4 (78-296)||(2857682-2857908)
chr4 (195-294)||(12099777-12099876)
[»] chr3 (2 HSPs)
chr3 (362-509)||(12346086-12346230)
chr3 (362-550)||(12366265-12366451)
[»] chr1 (5 HSPs)
chr1 (356-536)||(6314488-6314667)
chr1 (179-296)||(12496887-12497004)
chr1 (158-296)||(22855441-22855578)
chr1 (193-275)||(44921103-44921185)
chr1 (492-542)||(4695299-4695349)
[»] chr6 (3 HSPs)
chr6 (195-294)||(388427-388527)
chr6 (191-296)||(8446004-8446110)
chr6 (191-296)||(8454808-8454914)
[»] chr7 (1 HSPs)
chr7 (241-295)||(42648090-42648144)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 58 - 392
Target Start/End: Complemental strand, 36682782 - 36682447
Alignment:
Q  58 tgcttcttccactcggatctcaaccaccatgccgccttctccggtgatactgggtcatcgtaagg-tatgttacagagcaagagaagaagaagatcagtg 156  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  36682782 tgcttcttccactcggatctcaaccaccatgcctccttctccggtgatactgggtcgtcgtaagggtatgttacagagcaagagaagaagaagatcagtg 36682683  T
Q  157 aggtgaggagcgagaagaggcgcacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtg 256  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36682682 aggtgaggagggagaagaggcacacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaattgccattggtg 36682583  T
Q  257 tcttttttgtgtcaaaaaacctgtgtttgtttatcatttcgcattatgaaactagtcttggctaaattgttgagtgagtcataaaacagtcattcatggg 356  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36682582 tcttttttgtgtcaaaaaacctgtgtttgtttatcatttctcattatgaaattagtcttggctaaattgttgagtgagtcataaaacagtcattcatggg 36682483  T
Q  357 caaataaaagtctcaagcacatactaacaattaaaa 392  Q
    ||||||||||||||||||||||||||||||||||||    
T  36682482 caaataaaagtctcaagcacatactaacaattaaaa 36682447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 384 - 708
Target Start/End: Complemental strand, 36681093 - 36680770
Alignment:
Q  384 caattaaaactctcatctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgatacacaagatccgcatttatgaggcgagtctaga 483  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  36681093 caattaaatctctcatctcgtaaaagagaagaacataacatggatcaatagtcaaatattttatgatacacaagatccgcatttatgaggcgagtataga 36680994  T
Q  484 gcatcaaacttgcatctctatagaggaattaaagacatgaacataataactagagctttcagaaagatcaaacaaaattaggacatatttttattgaagc 583  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  36680993 gcatcaagcttgcatctctatagaggaattaaagacatgaacataataactagagctttcagaaagatcaaaccaaattatgacatatttttattgaagc 36680894  T
Q  584 acactggatttttattcgtttttcttctgcccaatatgttacaacacttcttttttagtcaaaaagatactctaaaagacaaaaacacaactatctatat 683  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||| ||||||     
T  36680893 acactggatttttattcgtttttcttctaccc-atatgttacaacacttcttttatagccaagaagatactctaaaagacgaaaacacaactgtctatac 36680795  T
Q  684 ccgtgtcattatttcaagttatatt 708  Q
    ||||||||||||||||||| |||||    
T  36680794 ccgtgtcattatttcaagtaatatt 36680770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 548
Target Start/End: Complemental strand, 6632448 - 6632409
Alignment:
Q  509 gaattaaagacatgaacataataactagagctttcagaaa 548  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  6632448 gaattaatgacatgaacataataaccagagctttcagaaa 6632409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 58 - 296
Target Start/End: Original strand, 36830118 - 36830356
Alignment:
Q  58 tgcttcttccactcggatctcaaccaccatgccgccttctccggtgatactgggtcatcgtaaggtatgttacagagcaagagaagaagaagatcagtga 157  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  36830118 tgcttcttccactcggatctcaaccaccatgcctccttctccggtgatactgggtcgtcgtaaggtatattacagagcaagataagaagaagatcagtga 36830217  T
Q  158 ggtgaggagcgagaagaggcgcacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgt 257  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36830218 ggtgaggagggagaagaggcgcacaaacacaagagagagggatgatttcataaaattatccatgcactttaaaagaaattacaaaaaatgccattggtgt 36830317  T
Q  258 cttttttgtgtcaaaaaacctgtgtttgtttatcatttc 296  Q
    |||||||||| |||||||||| ||| |||||||||||||    
T  36830318 cttttttgtgccaaaaaacctatgtctgtttatcatttc 36830356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 449 - 548
Target Start/End: Complemental strand, 18904877 - 18904781
Alignment:
Q  449 atacacaagatccgcatttatgaggcgagtctagagcatcaaacttgcatctctatagaggaattaaagacatgaacataataactagagctttcagaaa 548  Q
    ||||||||||||  |||||||||||||||| ||||||||   |||||||||| |||||||||||||  |||||||| |||||||||||||||||||||||    
T  18904877 atacacaagatcgtcatttatgaggcgagtgtagagcat---acttgcatctatatagaggaattactgacatgaatataataactagagctttcagaaa 18904781  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 363 - 546
Target Start/End: Original strand, 12470240 - 12470421
Alignment:
Q  363 aaagtctcaagcacatactaacaattaaaactctcatctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgatacacaaga-tcc 461  Q
    |||||||||| |||| |||| ||||||| ||| |||| || ||| |||||||||  |||||||||||||||||||  | |||| |||||||||| | |||    
T  12470240 aaagtctcaaccacaaactagcaattaagactatcatttcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcc 12470339  T
Q  462 gcatttatgaggcgagtctagagcatcaaacttgcatctctatagaggaattaaagacatgaacataataactagagctttcaga 546  Q
     | ||| |||||||||| |||||| |   ||||||||||||||||  |||||||  | |||||||| |||||||||| |||||||    
T  12470340 tcgtttctgaggcgagtgtagagcgt---acttgcatctctatagttgaattaataatatgaacatcataactagagttttcaga 12470421  T

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Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 78 - 296
Target Start/End: Original strand, 2857682 - 2857908
Alignment:
Q  78 caaccaccatgccgccttctccggtgatactgggtcatcgtaag-gtatgttacagagcaagagaagaagaagatcagtgaggtgagg--agcga----- 169  Q
    ||||||||||||| |||||| |||||| |||||||| |||| || |||||||||||||  ||||| |||||||||  ||||| |||||  || ||         
T  2857682 caaccaccatgcctccttcttcggtgacactgggtcgtcgtcagtgtatgttacagagtgagagaggaagaagattcgtgagctgagggaagagaagact 2857781  T
Q  170 gaagaggcgcacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgtc 269  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||| ||||||| |||||||||||||||||||||    
T  2857782 gaagaggcacacaaacacaagagagagggacgatttcacaaaattttccttgcattttaaaggaaattacgaaaaatggcattggtgtcttttttgtgtc 2857881  T
Q  270 aaaaaacctgtgtttgtttatcatttc 296  Q
    |||||| ||||||||||||||||||||    
T  2857882 aaaaaatctgtgtttgtttatcatttc 2857908  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 12099777 - 12099876
Alignment:
Q  195 agggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgtcaaaaaacctgtgtttgtttatcatt 294  Q
    ||||||||||| |||||||| ||||||||||||||| | ||| | ||||||| ||||||||||| | ||||||||  |||| ||||||||||||||||||    
T  12099777 agggatgattttacaaaattgtccttgcactttaaagggaataaaaaaaaataccattggtgtcgtatttgtgtctcaaaatctgtgtttgtttatcatt 12099876  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 362 - 509
Target Start/End: Complemental strand, 12346230 - 12346086
Alignment:
Q  362 aaaagtctcaagcacatactaacaattaaaactctcatctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgatacacaagatcc 461  Q
    |||||||||||||||| | || ||||||| |||  |||||| ||| |||||||| |||| ||||||||| ||||||  | |||| |||||||||||||||    
T  12346230 aaaagtctcaagcacagattatcaattaagactggcatctcataatagagaggaccatagcatggatcactagtcagatgttttctgatacacaagatcc 12346131  T
Q  462 gcatttatgaggcgagtctagagcatcaaacttgcatctctatagagg 509  Q
     ||||| |||||||||| ||||||||   |||||||||||||||||||    
T  12346130 tcatttctgaggcgagtgtagagcat---acttgcatctctatagagg 12346086  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 362 - 550
Target Start/End: Complemental strand, 12366451 - 12366265
Alignment:
Q  362 aaaagtctcaagcacatactaacaattaaaactctcatctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgatacacaagatcc 461  Q
    |||||||||||||||| | || ||||||| |||  |||||| ||| | |||||| | || ||||||||| ||||||  | |||| ||||||||||||| |    
T  12366451 aaaagtctcaagcacagattatcaattaagactggcatctcataataaagaggaccgtagcatggatcactagtcagatgttttctgatacacaagatgc 12366352  T
Q  462 gcatttatgaggcgagtctagagcatcaaacttgcatctctatagaggaattaaagacatgaacataataac-tagagctttcagaaaga 550  Q
     ||||| | |||||||| ||||||||   ||||||||||||||||||| | | | || |||||||||||||| |||||||||||||||||    
T  12366351 tcatttctaaggcgagtgtagagcat---acttgcatctctatagagggacttatgatatgaacataataacttagagctttcagaaaga 12366265  T

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Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 356 - 536
Target Start/End: Complemental strand, 6314667 - 6314488
Alignment:
Q  356 gcaaataaaagtctcaagcacatactaacaattaaaactct--catctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgataca 453  Q
    ||||| |||||||||||||||||||||| |||||||||| |  |||||||||| |||||||| |||||||| ||| ||||||||  | |||| | ||| |    
T  6314667 gcaaacaaaagtctcaagcacatactaaaaattaaaactataccatctcgtaatagagaggaccataacatagattaatagtcatatgttttttaatata 6314568  T
Q  454 caagatccgcatttatgaggcgagtctagagcatcaaacttgcatctctatagaggaattaaagacatgaacataataactag 536  Q
    |||||||  ||||| | ||| ||||  || ||||   |||| ||||||||||||| |||||| || |||||||||||||||||    
T  6314567 caagatcgtcatttctaaggtgagtggagcgcat---acttacatctctatagagaaattaatgatatgaacataataactag 6314488  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 179 - 296
Target Start/End: Original strand, 12496887 - 12497004
Alignment:
Q  179 cacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgtcaaaaaacct 278  Q
    |||| ||| |||| || |||||||||| |||||||| |||||||| |||||| |||||||||||||||  |||||||||| ||||||||||||||||  |    
T  12496887 cacacacaaaagatagggggatgattttacaaaattgtccttgcaatttaaaggaaattacaaaaaatctcattggtgtcatttttgtgtcaaaaaattt 12496986  T
Q  279 gtgtttgtttatcatttc 296  Q
    |||   ||||||||||||    
T  12496987 gtgcacgtttatcatttc 12497004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 158 - 296
Target Start/End: Complemental strand, 22855578 - 22855441
Alignment:
Q  158 ggtgaggagcgagaagaggcgcacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgt 257  Q
    ||||||| | ||||||||| | ||| ||||||||| |||| ||||| | |||| ||| |||||||||||||||  |||||||| ||||| ||||||||||    
T  22855578 ggtgaggggagagaagagg-gaacagacacaagagggaggaatgatctgacaatattgtccttgcactttaaagaaaattacagaaaataccattggtgt 22855480  T
Q  258 cttttttgtgtcaaaaaacctgtgtttgtttatcatttc 296  Q
    | ||||||||||||||||  ||||||  | |||||||||    
T  22855479 catttttgtgtcaaaaaatgtgtgttcatgtatcatttc 22855441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 44921103 - 44921185
Alignment:
Q  193 agagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgtcaaaaaa 275  Q
    ||||||||||||| |||||||||| | |||||||||||  ||||||||||||||| ||||||||||  |||||||| ||||||    
T  44921103 agagggatgattttacaaaattattcctgcactttaaagaaaattacaaaaaatgtcattggtgtccattttgtgtaaaaaaa 44921185  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 542
Target Start/End: Original strand, 4695299 - 4695349
Alignment:
Q  492 cttgcatctctatagaggaattaaagacatgaacataataactagagcttt 542  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  4695299 cttgtatctctatagaggaattaatgacatgaccataataactagagcttt 4695349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 388527 - 388427
Alignment:
Q  195 agggatgatttcacaaaattatccttgcactttaaaagaaattacaa-aaaatgccattggtgtcttttttgtgtcaaaaaacctgtgtttgtttatcat 293  Q
    ||||||||||| |||||||| ||||||||||||||| | |||||||| ||||| ||||||||||| | ||||||||  |||| |||||||||||||||||    
T  388527 agggatgattttacaaaattgtccttgcactttaaagggaattacaaaaaaataccattggtgtcgtatttgtgtctcaaaatctgtgtttgtttatcat 388428  T
Q  294 t 294  Q
    |    
T  388427 t 388427  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 8446110 - 8446004
Alignment:
Q  191 agagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaa-tgccattggtgtcttttttgtgtcaaaaaacctgtgtttgttta 289  Q
    |||||| ||||||||   |||||| ||||||||||||||| |||||||||||||| || ||||| |||| | ||||||||||||||  ||||||||||||    
T  8446110 agagagagatgattttctaaaattgtccttgcactttaaaggaaattacaaaaaaatgtcattgatgtcgtatttgtgtcaaaaaatttgtgtttgttta 8446011  T
Q  290 tcatttc 296  Q
    |||||||    
T  8446010 tcatttc 8446004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 8454914 - 8454808
Alignment:
Q  191 agagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaa-tgccattggtgtcttttttgtgtcaaaaaacctgtgtttgttta 289  Q
    |||||| ||||||||   |||||| ||||||||||||||| |||||||||||||| || ||||| |||| | ||||||||||||||  ||||||||||||    
T  8454914 agagagagatgattttctaaaattgtccttgcactttaaaggaaattacaaaaaaatgtcattgatgtcgtatttgtgtcaaaaaatttgtgtttgttta 8454815  T
Q  290 tcatttc 296  Q
    |||||||    
T  8454814 tcatttc 8454808  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 42648090 - 42648144
Alignment:
Q  241 aaaaatgccattggtgtcttttttgtgtcaaaaaacctgtgtttgtttatcattt 295  Q
    ||||||||||||| |||| | |||||||||||| |  ||||||||||||||||||    
T  42648090 aaaaatgccattgatgtcgtatttgtgtcaaaatatatgtgtttgtttatcattt 42648144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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