View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16586_low_2 (Length: 688)

Name: NF16586_low_2
Description: NF16586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16586_low_2
NF16586_low_2
[»] chr2 (3 HSPs)
chr2 (23-357)||(36682447-36682782)
chr2 (349-673)||(36680770-36681093)
chr2 (474-513)||(6632409-6632448)
[»] chr5 (3 HSPs)
chr5 (23-261)||(36830118-36830356)
chr5 (414-513)||(18904781-18904877)
chr5 (328-511)||(12470240-12470421)
[»] chr4 (2 HSPs)
chr4 (43-261)||(2857682-2857908)
chr4 (160-259)||(12099777-12099876)
[»] chr3 (2 HSPs)
chr3 (327-474)||(12346086-12346230)
chr3 (327-515)||(12366265-12366451)
[»] chr1 (5 HSPs)
chr1 (321-501)||(6314488-6314667)
chr1 (144-261)||(12496887-12497004)
chr1 (123-261)||(22855441-22855578)
chr1 (158-240)||(44921103-44921185)
chr1 (457-507)||(4695299-4695349)
[»] chr6 (3 HSPs)
chr6 (160-259)||(388427-388527)
chr6 (156-261)||(8446004-8446110)
chr6 (156-261)||(8454808-8454914)
[»] chr7 (1 HSPs)
chr7 (206-260)||(42648090-42648144)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 357
Target Start/End: Complemental strand, 36682782 - 36682447
Alignment:
Q  23 tgcttcttccactcggatctcaaccaccatgccgccttctccggtgatactgggtcatcgtaagg-tatgttacagagcaagagaagaagaagatcagtg 121  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  36682782 tgcttcttccactcggatctcaaccaccatgcctccttctccggtgatactgggtcgtcgtaagggtatgttacagagcaagagaagaagaagatcagtg 36682683  T
Q  122 aggtgaggagcgagaagaggcgcacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtg 221  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36682682 aggtgaggagggagaagaggcacacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaattgccattggtg 36682583  T
Q  222 tcttttttgtgtcaaaaaacctgtgtttgtttatcatttcgcattatgaaactagtcttggctaaattgttgagtgagtcataaaacagtcattcatggg 321  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36682582 tcttttttgtgtcaaaaaacctgtgtttgtttatcatttctcattatgaaattagtcttggctaaattgttgagtgagtcataaaacagtcattcatggg 36682483  T
Q  322 caaataaaagtctcaagcacatactaacaattaaaa 357  Q
    ||||||||||||||||||||||||||||||||||||    
T  36682482 caaataaaagtctcaagcacatactaacaattaaaa 36682447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 349 - 673
Target Start/End: Complemental strand, 36681093 - 36680770
Alignment:
Q  349 caattaaaactctcatctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgatacacaagatccgcatttatgaggcgagtctaga 448  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  36681093 caattaaatctctcatctcgtaaaagagaagaacataacatggatcaatagtcaaatattttatgatacacaagatccgcatttatgaggcgagtataga 36680994  T
Q  449 gcatcaaacttgcatctctatagaggaattaaagacatgaacataataactagagctttcagaaagatcaaacaaaattaggacatatttttattgaagc 548  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  36680993 gcatcaagcttgcatctctatagaggaattaaagacatgaacataataactagagctttcagaaagatcaaaccaaattatgacatatttttattgaagc 36680894  T
Q  549 acactggatttttattcgtttttcttctgcccaatatgttacaacacttcttttttagtcaaaaagatactctaaaagacaaaaacacaactatctatat 648  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||| ||||||     
T  36680893 acactggatttttattcgtttttcttctaccc-atatgttacaacacttcttttatagccaagaagatactctaaaagacgaaaacacaactgtctatac 36680795  T
Q  649 ccgtgtcattatttcaagttatatt 673  Q
    ||||||||||||||||||| |||||    
T  36680794 ccgtgtcattatttcaagtaatatt 36680770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 6632448 - 6632409
Alignment:
Q  474 gaattaaagacatgaacataataactagagctttcagaaa 513  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  6632448 gaattaatgacatgaacataataaccagagctttcagaaa 6632409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 36830118 - 36830356
Alignment:
Q  23 tgcttcttccactcggatctcaaccaccatgccgccttctccggtgatactgggtcatcgtaaggtatgttacagagcaagagaagaagaagatcagtga 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  36830118 tgcttcttccactcggatctcaaccaccatgcctccttctccggtgatactgggtcgtcgtaaggtatattacagagcaagataagaagaagatcagtga 36830217  T
Q  123 ggtgaggagcgagaagaggcgcacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgt 222  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36830218 ggtgaggagggagaagaggcgcacaaacacaagagagagggatgatttcataaaattatccatgcactttaaaagaaattacaaaaaatgccattggtgt 36830317  T
Q  223 cttttttgtgtcaaaaaacctgtgtttgtttatcatttc 261  Q
    |||||||||| |||||||||| ||| |||||||||||||    
T  36830318 cttttttgtgccaaaaaacctatgtctgtttatcatttc 36830356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 414 - 513
Target Start/End: Complemental strand, 18904877 - 18904781
Alignment:
Q  414 atacacaagatccgcatttatgaggcgagtctagagcatcaaacttgcatctctatagaggaattaaagacatgaacataataactagagctttcagaaa 513  Q
    ||||||||||||  |||||||||||||||| ||||||||   |||||||||| |||||||||||||  |||||||| |||||||||||||||||||||||    
T  18904877 atacacaagatcgtcatttatgaggcgagtgtagagcat---acttgcatctatatagaggaattactgacatgaatataataactagagctttcagaaa 18904781  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 328 - 511
Target Start/End: Original strand, 12470240 - 12470421
Alignment:
Q  328 aaagtctcaagcacatactaacaattaaaactctcatctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgatacacaaga-tcc 426  Q
    |||||||||| |||| |||| ||||||| ||| |||| || ||| |||||||||  |||||||||||||||||||  | |||| |||||||||| | |||    
T  12470240 aaagtctcaaccacaaactagcaattaagactatcatttcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcc 12470339  T
Q  427 gcatttatgaggcgagtctagagcatcaaacttgcatctctatagaggaattaaagacatgaacataataactagagctttcaga 511  Q
     | ||| |||||||||| |||||| |   ||||||||||||||||  |||||||  | |||||||| |||||||||| |||||||    
T  12470340 tcgtttctgaggcgagtgtagagcgt---acttgcatctctatagttgaattaataatatgaacatcataactagagttttcaga 12470421  T

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Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 43 - 261
Target Start/End: Original strand, 2857682 - 2857908
Alignment:
Q  43 caaccaccatgccgccttctccggtgatactgggtcatcgtaag-gtatgttacagagcaagagaagaagaagatcagtgaggtgagg--agcga----- 134  Q
    ||||||||||||| |||||| |||||| |||||||| |||| || |||||||||||||  ||||| |||||||||  ||||| |||||  || ||         
T  2857682 caaccaccatgcctccttcttcggtgacactgggtcgtcgtcagtgtatgttacagagtgagagaggaagaagattcgtgagctgagggaagagaagact 2857781  T
Q  135 gaagaggcgcacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgtc 234  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||| ||||||| |||||||||||||||||||||    
T  2857782 gaagaggcacacaaacacaagagagagggacgatttcacaaaattttccttgcattttaaaggaaattacgaaaaatggcattggtgtcttttttgtgtc 2857881  T
Q  235 aaaaaacctgtgtttgtttatcatttc 261  Q
    |||||| ||||||||||||||||||||    
T  2857882 aaaaaatctgtgtttgtttatcatttc 2857908  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 12099777 - 12099876
Alignment:
Q  160 agggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgtcaaaaaacctgtgtttgtttatcatt 259  Q
    ||||||||||| |||||||| ||||||||||||||| | ||| | ||||||| ||||||||||| | ||||||||  |||| ||||||||||||||||||    
T  12099777 agggatgattttacaaaattgtccttgcactttaaagggaataaaaaaaaataccattggtgtcgtatttgtgtctcaaaatctgtgtttgtttatcatt 12099876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 327 - 474
Target Start/End: Complemental strand, 12346230 - 12346086
Alignment:
Q  327 aaaagtctcaagcacatactaacaattaaaactctcatctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgatacacaagatcc 426  Q
    |||||||||||||||| | || ||||||| |||  |||||| ||| |||||||| |||| ||||||||| ||||||  | |||| |||||||||||||||    
T  12346230 aaaagtctcaagcacagattatcaattaagactggcatctcataatagagaggaccatagcatggatcactagtcagatgttttctgatacacaagatcc 12346131  T
Q  427 gcatttatgaggcgagtctagagcatcaaacttgcatctctatagagg 474  Q
     ||||| |||||||||| ||||||||   |||||||||||||||||||    
T  12346130 tcatttctgaggcgagtgtagagcat---acttgcatctctatagagg 12346086  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 327 - 515
Target Start/End: Complemental strand, 12366451 - 12366265
Alignment:
Q  327 aaaagtctcaagcacatactaacaattaaaactctcatctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgatacacaagatcc 426  Q
    |||||||||||||||| | || ||||||| |||  |||||| ||| | |||||| | || ||||||||| ||||||  | |||| ||||||||||||| |    
T  12366451 aaaagtctcaagcacagattatcaattaagactggcatctcataataaagaggaccgtagcatggatcactagtcagatgttttctgatacacaagatgc 12366352  T
Q  427 gcatttatgaggcgagtctagagcatcaaacttgcatctctatagaggaattaaagacatgaacataataac-tagagctttcagaaaga 515  Q
     ||||| | |||||||| ||||||||   ||||||||||||||||||| | | | || |||||||||||||| |||||||||||||||||    
T  12366351 tcatttctaaggcgagtgtagagcat---acttgcatctctatagagggacttatgatatgaacataataacttagagctttcagaaaga 12366265  T

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Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 321 - 501
Target Start/End: Complemental strand, 6314667 - 6314488
Alignment:
Q  321 gcaaataaaagtctcaagcacatactaacaattaaaactct--catctcgtaaaagagaggaacataacatggatcaatagtcaagtattttatgataca 418  Q
    ||||| |||||||||||||||||||||| |||||||||| |  |||||||||| |||||||| |||||||| ||| ||||||||  | |||| | ||| |    
T  6314667 gcaaacaaaagtctcaagcacatactaaaaattaaaactataccatctcgtaatagagaggaccataacatagattaatagtcatatgttttttaatata 6314568  T
Q  419 caagatccgcatttatgaggcgagtctagagcatcaaacttgcatctctatagaggaattaaagacatgaacataataactag 501  Q
    |||||||  ||||| | ||| ||||  || ||||   |||| ||||||||||||| |||||| || |||||||||||||||||    
T  6314567 caagatcgtcatttctaaggtgagtggagcgcat---acttacatctctatagagaaattaatgatatgaacataataactag 6314488  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 12496887 - 12497004
Alignment:
Q  144 cacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgtcaaaaaacct 243  Q
    |||| ||| |||| || |||||||||| |||||||| |||||||| |||||| |||||||||||||||  |||||||||| ||||||||||||||||  |    
T  12496887 cacacacaaaagatagggggatgattttacaaaattgtccttgcaatttaaaggaaattacaaaaaatctcattggtgtcatttttgtgtcaaaaaattt 12496986  T
Q  244 gtgtttgtttatcatttc 261  Q
    |||   ||||||||||||    
T  12496987 gtgcacgtttatcatttc 12497004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 123 - 261
Target Start/End: Complemental strand, 22855578 - 22855441
Alignment:
Q  123 ggtgaggagcgagaagaggcgcacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgt 222  Q
    ||||||| | ||||||||| | ||| ||||||||| |||| ||||| | |||| ||| |||||||||||||||  |||||||| ||||| ||||||||||    
T  22855578 ggtgaggggagagaagagg-gaacagacacaagagggaggaatgatctgacaatattgtccttgcactttaaagaaaattacagaaaataccattggtgt 22855480  T
Q  223 cttttttgtgtcaaaaaacctgtgtttgtttatcatttc 261  Q
    | ||||||||||||||||  ||||||  | |||||||||    
T  22855479 catttttgtgtcaaaaaatgtgtgttcatgtatcatttc 22855441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 44921103 - 44921185
Alignment:
Q  158 agagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgtcaaaaaa 240  Q
    ||||||||||||| |||||||||| | |||||||||||  ||||||||||||||| ||||||||||  |||||||| ||||||    
T  44921103 agagggatgattttacaaaattattcctgcactttaaagaaaattacaaaaaatgtcattggtgtccattttgtgtaaaaaaa 44921185  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 457 - 507
Target Start/End: Original strand, 4695299 - 4695349
Alignment:
Q  457 cttgcatctctatagaggaattaaagacatgaacataataactagagcttt 507  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  4695299 cttgtatctctatagaggaattaatgacatgaccataataactagagcttt 4695349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 388527 - 388427
Alignment:
Q  160 agggatgatttcacaaaattatccttgcactttaaaagaaattacaa-aaaatgccattggtgtcttttttgtgtcaaaaaacctgtgtttgtttatcat 258  Q
    ||||||||||| |||||||| ||||||||||||||| | |||||||| ||||| ||||||||||| | ||||||||  |||| |||||||||||||||||    
T  388527 agggatgattttacaaaattgtccttgcactttaaagggaattacaaaaaaataccattggtgtcgtatttgtgtctcaaaatctgtgtttgtttatcat 388428  T
Q  259 t 259  Q
    |    
T  388427 t 388427  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 8446110 - 8446004
Alignment:
Q  156 agagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaa-tgccattggtgtcttttttgtgtcaaaaaacctgtgtttgttta 254  Q
    |||||| ||||||||   |||||| ||||||||||||||| |||||||||||||| || ||||| |||| | ||||||||||||||  ||||||||||||    
T  8446110 agagagagatgattttctaaaattgtccttgcactttaaaggaaattacaaaaaaatgtcattgatgtcgtatttgtgtcaaaaaatttgtgtttgttta 8446011  T
Q  255 tcatttc 261  Q
    |||||||    
T  8446010 tcatttc 8446004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 8454914 - 8454808
Alignment:
Q  156 agagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaaa-tgccattggtgtcttttttgtgtcaaaaaacctgtgtttgttta 254  Q
    |||||| ||||||||   |||||| ||||||||||||||| |||||||||||||| || ||||| |||| | ||||||||||||||  ||||||||||||    
T  8454914 agagagagatgattttctaaaattgtccttgcactttaaaggaaattacaaaaaaatgtcattgatgtcgtatttgtgtcaaaaaatttgtgtttgttta 8454815  T
Q  255 tcatttc 261  Q
    |||||||    
T  8454814 tcatttc 8454808  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 42648090 - 42648144
Alignment:
Q  206 aaaaatgccattggtgtcttttttgtgtcaaaaaacctgtgtttgtttatcattt 260  Q
    ||||||||||||| |||| | |||||||||||| |  ||||||||||||||||||    
T  42648090 aaaaatgccattgatgtcgtatttgtgtcaaaatatatgtgtttgtttatcattt 42648144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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