View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16586_low_3 (Length: 488)
Name: NF16586_low_3
Description: NF16586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16586_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 36207444 - 36207897
Alignment:
| Q |
17 |
gaagagtacctacaggagccaaccctttacacaataagaaatagtagtatagtagcagctatttatattttccatgtacagggaagtatatatacatagt |
116 |
Q |
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| T |
36207444 |
gaagagtacctacaggagccaaccctttacacaataagaaatagtagtatagtagcagctatttattttt--catgtacagggaagtatatatacatagt |
36207541 |
T |
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| Q |
117 |
ttatatgctagcataattgaagttgcatttgtatatgatattattataatattagaaagagtggttaatttgttttgttagctagatttgctcttgttgt |
216 |
Q |
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| T |
36207542 |
ttatatgctagcataattgaagttgcatttgtatatgatattattataatattagaaagagtggttaatttgtttcgttagctagatttgctcttgttgt |
36207641 |
T |
|
| Q |
217 |
atagagataaaaagattttgtggttatgga---ataaaaccatgcatatgtgagtttgagtttgttactagtgtttagttttaccatatatacattttct |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36207642 |
atagagataaaaagattttgtggttatggaagtataaaaccatgcatatgtgagtttgagtttgttactagtgtttagttttactgtatatacattttct |
36207741 |
T |
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| Q |
314 |
ttgaatggaaagaagcttcctgttccattgaaacttgcaccaaattttgaagaaaccagttatagtatgatttatatcatcaataatttgatgcttcagt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| || |
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| T |
36207742 |
ttgaatggaaagaagcttcctgttccattgaaacttgcaccaaattttgaagaaaccag-tatagtatga-ttatatcatcaataatttactgcttctgt |
36207839 |
T |
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| Q |
414 |
ggatcaacttcaaagatggatctccatcataatttataccatatcaatatacaacttt |
471 |
Q |
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| T |
36207840 |
ggatcaacttcaaagatggatctccatcataatttataccatatcaatatacaacttt |
36207897 |
T |
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