View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_high_13 (Length: 314)
Name: NF16587_high_13
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 20048010 - 20047807
Alignment:
| Q |
15 |
gatgaatgcaatttcatttcttaacgtactcttgtttaactattttagcctaaaaatttctaatgtcaaa--gatatccacaaagatttgtttagttttt |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
20048010 |
gatgaatgcaatttcatttcttaatgtactcttgtttaactattttagcctaaaaatttctaatttcaaaaagatatccacaaagatttgtttagttttt |
20047911 |
T |
|
| Q |
113 |
atccaacaataacctttgaatgcacaagttatttgttagtgccaatgagaaatatgttcctaagaatattttaatcaagagatcaagttatactctagat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20047910 |
atccaacaataacctttgaatgcacaagttatttgttagtgccaatgagaaatatgttcctaagaatattttaatcaagagataaagttatactctagat |
20047811 |
T |
|
| Q |
213 |
tatg |
216 |
Q |
| |
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|||| |
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|
| T |
20047810 |
tatg |
20047807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 52 - 278
Target Start/End: Original strand, 19904520 - 19904754
Alignment:
| Q |
52 |
aactattttagcctaaaaatttctaatgtcaaa-gata---tccacaaagatttgtttagtttttatccaacaataacctttgaatgcacaagttatttg |
147 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19904520 |
aactattttagcctaaaaatttctggtgtcaaaagatacaatccacaaagatttggttagtttttatccaacaataacctttgaatgcacaagttatttg |
19904619 |
T |
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| Q |
148 |
ttagtgccaatgagaaatatgttcctaagaatattttaatcaagagatcaagt----tatactctagattatgctcttcatatgacaaaatcaatatctt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |
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| T |
19904620 |
ttagtgccaatgagaaatatgttcctaagaatattttaatcaagagatcaagttatatatactctagattatgctcttcatataacaaaatcaatatcat |
19904719 |
T |
|
| Q |
244 |
aaatgaattcaatattgtcatgatctacatataat |
278 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
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| T |
19904720 |
aaatgaattcaatatcgtcatgatctacatataat |
19904754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 274
Target Start/End: Original strand, 20014147 - 20014260
Alignment:
| Q |
162 |
aaatatgttcctaagaatattttaatcaagaga-tcaagttatactctagattatgctcttcatatgacaaaatcaatatcttaaatgaattcaatattg |
260 |
Q |
| |
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||||||| |||||| | ||||||| |||| ||| | |||| |||||||| | |||||| ||||||| |||||||||||||||| | ||| ||||||||| |
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| T |
20014147 |
aaatatgctcctaaaattattttagtcaacagaataaagtgatactctaaactatgcttttcatataacaaaatcaatatcttcattgacttcaatattt |
20014246 |
T |
|
| Q |
261 |
tcatgatctacata |
274 |
Q |
| |
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|||||||| |||| |
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|
| T |
20014247 |
ccatgatcttcata |
20014260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 20047808 - 20047771
Alignment:
| Q |
259 |
tgtcatgatctacatataatgaaagctattatgaagca |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
20047808 |
tgtcatgatctacatataatgaaagctattatgaagca |
20047771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 26649249 - 26649172
Alignment:
| Q |
197 |
aagttatactctagattatgctcttcatatgacaaaatcaatatcttaaatgaattcaatattgtcatgatctacata |
274 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |||||||| ||||| | | || |||||||||| |||||||| |||| |
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| T |
26649249 |
aagtgatactccagattatgctcttcatataacaaaatcgatatcgtcattggcttcaatattgccatgatctgcata |
26649172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 9817151 - 9817061
Alignment:
| Q |
184 |
taatcaagagatcaagttatactctagattatgctcttcatatgacaaaatcaatatcttaaatgaattcaatattgtcatgatctacata |
274 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||| || | ||| |||||||||| ||||||||||||| |
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| T |
9817151 |
taatcaacagatcaagtgatactctagattaagctcttcatatctcaaaatcaatattttcactgacttcaatattgccatgatctacata |
9817061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 26352860 - 26352934
Alignment:
| Q |
197 |
aagttatactctagattatgctcttcatatgacaaaatcaatatcttaaatgaattcaatattgtcatgatctac |
271 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||||||||||| | ||| |||||||||| |||||||||| |
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| T |
26352860 |
aagtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctac |
26352934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 25999383 - 25999465
Alignment:
| Q |
192 |
agatcaagttatactctagattatgctcttcatatgacaaaatcaatatctta-----aatgaattcaatattgtcatgatct |
269 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| | |||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
25999383 |
agatcaagtcatactctagattaggctcttcacaggacaaaatcaatatcttatcttcaatgatttcaatattgtcatgatct |
25999465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 1719258 - 1719181
Alignment:
| Q |
197 |
aagttatactctagattatgctcttcatatgacaaaatcaatatcttaaatgaattcaatattgtcatgatctacata |
274 |
Q |
| |
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|||| ||||||| ||||| |||||||||| |||||||||||||||| ||||| |||||||||| |||||||| |||| |
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| T |
1719258 |
aagtgatactctcgattacactcttcatataacaaaatcaatatcttcaatgacttcaatattgccatgatctgcata |
1719181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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