View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_high_16 (Length: 249)
Name: NF16587_high_16
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 87 - 237
Target Start/End: Complemental strand, 20318526 - 20318376
Alignment:
| Q |
87 |
cttcataatttcttttaggaatttgatacaacaaggactttcttctagcatatccttaatgggcatcttgactttgtaacttgctaagatattgcacagc |
186 |
Q |
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| T |
20318526 |
cttcataatttcttttaggaatttgatacaacaaggactttcttctagcatatccttaatgggcatcttgactttgtaccttgctaagatattgcacagc |
20318427 |
T |
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| Q |
187 |
tcctagaaactttcttgttcatcttctttcttctccttatacttcgtttct |
237 |
Q |
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| T |
20318426 |
tccttgaaactttcttgttcatcttctttcttctccatatgcttcgtttct |
20318376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 20318637 - 20318547
Alignment:
| Q |
1 |
aagagtaaaacatcatgggtctttgagtttttctggaacctatacttcaaacactgcacaacaattctttattaatgagacaaattcttca |
91 |
Q |
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| T |
20318637 |
aagagtaaaacatcgtgggtctttgagtttttctggaacctatacttcaaacactgcacaacaattctttattaatgagacaaattcttca |
20318547 |
T |
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