View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_high_17 (Length: 238)
Name: NF16587_high_17
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 17996170 - 17996372
Alignment:
| Q |
18 |
tgttgcacctccaaaacatcattatgatggaacagttcccctataaaggcccactgcaaatagtccagcatatcctccgatggaagaatttccaatgttg |
117 |
Q |
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| T |
17996170 |
tgttgcacctccaaagcatccttctgatggaacagttcccccataaaggtccactgcaaatagtctagcatctccttcgatggaacaatttccaatgttg |
17996269 |
T |
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| Q |
118 |
gagaaaccccattcataaccggaaaattatccttctccaacgtcaacgcatttttgaacgatttccccggagtagcggtgacgccaaagccttcctccgc |
217 |
Q |
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||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17996270 |
gagcaaccccattcaaaatcggaaaattatccttttccaacgtcaacgcatttttgaacgatttccccggagtagcggtgacgccaaagccttcctccgc |
17996369 |
T |
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| Q |
218 |
ctc |
220 |
Q |
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||| |
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| T |
17996370 |
ctc |
17996372 |
T |
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