View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16587_high_18 (Length: 237)

Name: NF16587_high_18
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16587_high_18
NF16587_high_18
[»] chr2 (2 HSPs)
chr2 (105-221)||(34895426-34895542)
chr2 (19-75)||(20150439-20150495)
[»] chr7 (2 HSPs)
chr7 (1-72)||(38140346-38140417)
chr7 (1-74)||(6622294-6622367)
[»] chr4 (2 HSPs)
chr4 (1-75)||(4068331-4068405)
chr4 (30-75)||(9860036-9860082)
[»] chr5 (2 HSPs)
chr5 (1-93)||(2249231-2249323)
chr5 (11-67)||(950670-950726)
[»] chr8 (3 HSPs)
chr8 (1-76)||(31219203-31219278)
chr8 (1-74)||(15808679-15808752)
chr8 (7-75)||(17000221-17000289)
[»] chr3 (3 HSPs)
chr3 (1-75)||(29577281-29577355)
chr3 (1-75)||(50173386-50173460)
chr3 (1-75)||(34301260-34301335)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 34895542 - 34895426
Alignment:
Q  105 gcctaaccctaacccgaggtaaacactagacattcttagcatctgcggtaggtctcgtctatttgtagttttccacctataattgcatcttagtatcaaa 204  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34895542 gcctaaccctaacctgaggtaaacactagacattcttagcatctgcggtaggtctcgtctatttctagttttccacctataattgcatcttagtatcaaa 34895443  T
Q  205 tcctcgggattagttat 221  Q
    |||||||||||||||||    
T  34895442 tcctcgggattagttat 34895426  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 20150439 - 20150495
Alignment:
Q  19 attaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttccttttt 75  Q
    ||||||||| |||||||||||  ||||  ||||||||||| ||||||||||||||||    
T  20150439 attaaaatattaaaaagtaactatttcaacataaaatttatcaattgtttccttttt 20150495  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 38140417 - 38140346
Alignment:
Q  1 aaattatgtatttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttcctt 72  Q
    ||||| |||||||| |||||| |||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  38140417 aaattgtgtatttgacttattgaaatatcaaaaagtaacattttctacataaaatttaacaattgtttcctt 38140346  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6622294 - 6622367
Alignment:
Q  1 aaattatgtatttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttcctttt 74  Q
    ||||| |||||||  ||| ||| |||| |||||||| || |||||| | | |||||||||||||||||||||||    
T  6622294 aaattgtgtatttaacttgttagaatattaaaaagttactttttctacgtcaaatttaacaattgtttcctttt 6622367  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4068331 - 4068405
Alignment:
Q  1 aaattatgtatttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttccttttt 75  Q
    ||||| |||||||| |||||| |||||| |||||||||| |||||| |||| ||||||||||||||||| |||||    
T  4068331 aaattgtgtatttgacttattgaaataccaaaaagtaactttttctacatagaatttaacaattgtttctttttt 4068405  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 9860082 - 9860036
Alignment:
Q  30 aaaaagtaacatt-ttctgcataaaatttaacaattgtttccttttt 75  Q
    |||||||||| || |||| ||||||||||||||||||||||||||||    
T  9860082 aaaaagtaactttcttctacataaaatttaacaattgtttccttttt 9860036  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2249231 - 2249323
Alignment:
Q  1 aaattatgtatttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttcctttttaaaccattcactaatgcc 93  Q
    ||||| ||||||||  ||||| ||||||||||||||||| | |||  ||||||||||| |||||||||||||||| || | || |||||||||    
T  2249231 aaattgtgtatttgatttattgaaatactaaaaagtaacttcttcaacataaaatttagcaattgtttcctttttgaatctttgactaatgcc 2249323  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 950726 - 950670
Alignment:
Q  11 tttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtt 67  Q
    |||| |||||| ||||||||||||||||| |||||| |||||||| || ||||||||    
T  950726 tttgacttattgaaatactaaaaagtaactttttctacataaaatctagcaattgtt 950670  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31219278 - 31219203
Alignment:
Q  1 aaattatgtatttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttccttttta 76  Q
    |||||||||||||| |||||| |||||||||||  |||| ||||||   ||||||||| |||||||||||||||||    
T  31219278 aaattatgtatttgacttattgaaatactaaaatctaactttttctatctaaaatttagcaattgtttccttttta 31219203  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15808752 - 15808679
Alignment:
Q  1 aaattatgtatttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttcctttt 74  Q
    ||||| |||||||  |||||| ||| | ||||||| ||| |||| | |||||||||||||||||| ||||||||    
T  15808752 aaattgtgtatttaacttattgaaagattaaaaaggaactttttatacataaaatttaacaattgcttcctttt 15808679  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 17000289 - 17000221
Alignment:
Q  7 tgtatttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttccttttt 75  Q
    ||||| || |||||| |||| |||||||||||| |||||  | || |||||||||||||||| ||||||    
T  17000289 tgtatctgacttattgaaatgctaaaaagtaactttttccacgtagaatttaacaattgttttcttttt 17000221  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29577355 - 29577281
Alignment:
Q  1 aaattatgtatttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttccttttt 75  Q
    ||||| |||||||| ||| || |||||  |||||||||  |||||| ||||||||||| ||||||||||||||||    
T  29577355 aaattgtgtatttgacttcttgaaatatcaaaaagtaattttttctacataaaatttagcaattgtttccttttt 29577281  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 50173386 - 50173460
Alignment:
Q  1 aaattatgtatttggcttattaaaatactaaaaagtaacattttctgcataaaatttaacaattgtttccttttt 75  Q
    ||||| |||||||| |||||| |||||| |||||| |||  ||||  ||||||||||| ||||||||||||||||    
T  50173386 aaattgtgtatttgacttattgaaataccaaaaagcaactctttcaacataaaatttagcaattgtttccttttt 50173460  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34301260 - 34301335
Alignment:
Q  1 aaattatgtatttggcttattaaaatactaaaaagtaacatttt-ctgcataaaatttaacaattgtttccttttt 75  Q
    ||||| |||||||| |||||  |||||| |||||||||  |||| || ||||||||||||||||| ||||||||||    
T  34301260 aaattgtgtatttgacttatagaaataccaaaaagtaatttttttctacataaaatttaacaattttttccttttt 34301335  T

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