View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_high_2 (Length: 509)
Name: NF16587_high_2
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 30977733 - 30978229
Alignment:
| Q |
1 |
caaaatcaaaatatgattgctaattgataagacatatatataacattatgaaaaagaaatgatgcatatctttgaagatttcatcacttacaatattttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30977733 |
caaaatcaaaatatgattgctaattgataagacatatatataacattatgaaaaagaaataatgcatatctttgaagatttcatcacttacaatattttc |
30977832 |
T |
|
| Q |
101 |
tgaattatggtttgaaaaatttctaaatcacttgatcattacaagatatatatttagaattcatccaacnnnnnnnnn--gacaaaagaactcatccaac |
198 |
Q |
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| T |
30977833 |
tgaatcatggtttgaaaaatttctaaatcacttgatcattacaagatatatatttagaattcatccaactttttttttttgacaaaagaactcatccaac |
30977932 |
T |
|
| Q |
199 |
ttaaacaacaaattacaaaagaaatactaaacaataaggtccttgaaatgcataataatacaaaaagtcctaattaaaatgcaagaaagttaaaacaaat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30977933 |
ttaaacaacaaattacaaaagaaatactaaacaataaggtccttgaaatgcataataatacaaaaagtcctaattaaaatgcaagaaagttaaaacaaat |
30978032 |
T |
|
| Q |
299 |
atatctgaagttgcacatcatttgcagtactagctagtcactgaactatatatataaatttgtttgataaattgcaccttgtttgttacataactagcta |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30978033 |
atatctgaagttgcacatcatttgcagtactagctagtcactgaactatatatataaatttgtttgataaattgcaccttgattgttacataactagcta |
30978132 |
T |
|
| Q |
399 |
gagatgaagctccaaatctaacttttcctcttggtgtttaaacaaccctattcctaactccaatgtaatgttttgctcattattcatcaaaacattg |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30978133 |
gagatgaagctccaaatctaacttttcctcttggtgtttaaacaaccctattcctaactccaatgtaatgttttgctcattattcatcaaaacattg |
30978229 |
T |
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